Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1267 ATGCTTGTGGCATTGCTCTTGCTTCTTGCATTGAGCAATGCCGTGAATGTTTATGGAGATGTTGAGATATGTCGTTTGAATCCTAAATTGGATCCTAGACCACACAGTGTCTCTATTTTGGAATTTGGTGCAGTTGGAGATGGTAAAACACTGAATACAATTGCATTTCAGAATGCAATTTTCTATCTCAAGTCATTTGCTGATAAGGGTGGTGCTCAGCTCTATGTGCCACCAGGAAACTGGCTTACTGGTAGTTTCAATCTTACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGAATATTATTGAAGCTTTACCTTCTTATGGCCGAGGGAAAGATGTTCCTGACGGAAGATACAAGAGCTTGATAAATGGTAACCAGTTGGAGGATGTGGTCATAACAGGCAATAATGGAACCATTGATGGCAATGGAATGGTTTGGTGGGACTCGTATAAGTCTCATTCCCTTAACCACAGTCGTCCTCATCTAGTTGAAATTATATCATCTGATTTCGTCGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCTGTTTATTGCAGCAATGTACATATTCAAAACATTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGCCGGTATAGTACCAGATTCTTCTAATAATGTCTGTATAGAAGATTGTTTTGTTTCCATTGGTTTTGACGCAATTTCTCTCAAAAGTGGATGGGATCAGTACGGCATTAACTATGGAAGACCAAGTGAGAAAGTACATATAAGAAGGGTTCATCTTCGTGCATTTACCGGCTCTGCTATTTCATTTGGTACTGAAATGTCTGGTGGAATTTCAAAAGTCCTGATAGAGCATGTTAACATTTTCAACTCAAATAGTGGCATTGAGTTCAGAACAACCAAAGGAAGAGGTGGTTACATAAAAGAAATTGCTTTATCACACATAGAAATGGAAAATGTTCATACAGCAATTTCAGCCAAAGGTAATTCTGGTTCTCATCCTGATGACAAATTTGATCCAAAAGCACTTCCACTTTTGGATCACATAACATTGAAGGATATAACTGGAAAAAATATTACAATCGCCGGAAGCTTAAGTGGCATAGAAGAATCACCCTTCACAAACATATGCCTTTCAAATATAACCTTGTCTACAAATTCCGTTTCTTCAAGTAAATGGGAATGTTCAAATGTCTCGGGATTTTCAGACTCGGTGTTGCCTAAACCTTGTCAAGAACTCGGCAACCCTTCAAATTCTTCATCATCATCGTGTTTCTACCTCATGAGTCTCGGTCAAAAAACTGCAGCGATTTAA 1359 0.3893 MLVALLLLLALSNAVNVYGDVEICRLNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGNWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWNIIEALPSYGRGKDVPDGRYKSLINGNQLEDVVITGNNGTIDGNGMVWWDSYKSHSLNHSRPHLVEIISSDFVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPESPYTAGIVPDSSNNVCIEDCFVSIGFDAISLKSGWDQYGINYGRPSEKVHIRRVHLRAFTGSAISFGTEMSGGISKVLIEHVNIFNSNSGIEFRTTKGRGGYIKEIALSHIEMENVHTAISAKGNSGSHPDDKFDPKALPLLDHITLKDITGKNITIAGSLSGIEESPFTNICLSNITLSTNSVSSSKWECSNVSGFSDSVLPKPCQELGNPSNSSSSSCFYLMSLGQKTAAI* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1267 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 446 - -
Mtr2g1267 452 Gene3D - 24 419 IPR012334 -
Mtr2g1267 452 SUPERFAMILY Pectin lyase-like 31 428 IPR011050 -
Mtr2g1267 452 SMART pbh1 231 252 IPR006626 -
Mtr2g1267 452 SMART pbh1 293 314 IPR006626 -
Mtr2g1267 452 SMART pbh1 181 203 IPR006626 -
Mtr2g1267 452 SMART pbh1 204 230 IPR006626 -
Mtr2g1267 452 SMART pbh1 265 287 IPR006626 -
Mtr2g1267 452 SMART pbh1 135 161 IPR006626 -
Mtr2g1267 452 Pfam Glycosyl hydrolases family 28 132 414 IPR000743 GO:0004650|GO:0005975
Mtr2g1267 452 PANTHER PECTIN LYASE-RELATED 2 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1267 Mtr-Chr2 13679284 13683193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1267 1 440 Glycoside Hydrolase AT3G16850 63.492 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1267 - - gmx:100777503 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1267 2 13679284 13683193 Mtr2g1267 2 13679284 13683193 ECH
Mtr4g4412 4 58118882 58122885 Mtr2g1267 2 13679284 13683193 PCT