Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4078 ATGACAAATTCATCCAGGAACCTACCTGATTTCAAGAAATCTGTTAAATTGAAGTATGTTAAACTTGGTTATCACTATCTAATCACTCATGGAATGTACCTTTTTCTTTCCCCACTTGTGGTGTTGATTGCTGCTCAGATATCCACCTTTTCCATCCAAGACTTTTATGATATTTGGGAGCATCTACAATACAATTTGGTATCTGTCATTTTTTGTTCAACTCTCCTTGTTTTTCTGTCCACGCTTTACTTTTTGACTCGTCCGAAACCAGTGTACCTTGTTGATTTCTCATGTTACAAGCCTGAAGAATCTCGCAAGTGCACGAAAAGGAAATTTATGGATCAGTCTAGGATGATCAGTACTTTTACGGAGGAAAATCTCGAATTTCAGCGAAAGATTCTTGAGAGATCGGGACTTGGGGAATCTACTTATCTTCCTGAGGCTGTTCTTAACTTTCCTCCTAATCCTTCAATGAAAGAAGCTAGAAAAGAAGCTGAGACTGTGATGTTTGGTGCCATTGATGAGCTATTTAGTAAGACCTCAGTAAAGCCTAAAGATATAGGAATTCTGATTGTAAACTGTAGCCTGTTCAACCCAACTCCGTCGCTATCTTCAATGATTGTCAATCATTACAAGCTTCGAGGGAATATAAAGAGCTACAACCTAGGTGGGATGGGTTGCAGTGCGGGACTGATCTCGATTGATCTTGCTAAAGATCTTCTCCAGGCCAATCCTAATTCGTATGCATTGGTCATTAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGGTCGAAACTTGTTTCTAATTGTTTGTTTCGAATGGGAGGAGCTGTGGTTCTGCTTTCCAATAAAAGCTCAGACAGAAGAAGATCAAAATACCAATTGATCACCACGGTTCGCACTAACAAGGCTTCTGATGACAAGTGTTTTAGCTGCGTAACCCAAGAAGAAGATGCCAATGGCAAGATTGGTGTTACCTTGTCAAAAGATCTTATGGCAGTTGCCGGTGATGCTTTAAAAACTAATATCACTACACTAGGGCCTCTCGTACTTCCAACATCAGAACAGCTACTATTCTTCACCACATTGGTTGGGAAGAAACTTTTCAAGATGAAGATAAAACCTTATATTCCTGATTTCAAGCTAGCTTTTGAACATTTTTGCATCCATGCCGGAGGTAGAGCTGTTTTGGATGAACTGGAGAAAAACTTGCAGCTATCTCCATGGCATATGGAGCCATCGAGGATGACACTTTATCGTTTTGGAAACACATCTAGCAGTTCACTTTGGTATGAATTGGCTTACACAGAAGCCAAAGGGAGAATTAAGAAGGGAGATAGAACATGGCAAATAGCATTTGGTTCTGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACAATCAACCCTGTGAAGGAGAAAAGCCCTTGGATAGATGAGATTGGCCAGTTTCCTGTTGATGTTCCAAAGGTATCTACCATCTAA 1503 0.4032 MTNSSRNLPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVLIAAQISTFSIQDFYDIWEHLQYNLVSVIFCSTLLVFLSTLYFLTRPKPVYLVDFSCYKPEESRKCTKRKFMDQSRMISTFTEENLEFQRKILERSGLGESTYLPEAVLNFPPNPSMKEARKEAETVMFGAIDELFSKTSVKPKDIGILIVNCSLFNPTPSLSSMIVNHYKLRGNIKSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAVVLLSNKSSDRRRSKYQLITTVRTNKASDDKCFSCVTQEEDANGKIGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFTTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPVKEKSPWIDEIGQFPVDVPKVSTI* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4078 500 CDD CHS_like 76 468 - -
Mtr4g4078 500 Pfam FAE1/Type III polyketide synthase-like protein 83 372 IPR013601 GO:0006633|GO:0016020|GO:0016747
Mtr4g4078 500 PANTHER 3-KETOACYL-COA SYNTHASE 1 499 IPR012392 GO:0006633|GO:0016020|GO:0016747
Mtr4g4078 500 SUPERFAMILY Thiolase-like 302 469 IPR016039 GO:0016746
Mtr4g4078 500 SUPERFAMILY Thiolase-like 77 295 IPR016039 GO:0016746
Mtr4g4078 500 Gene3D - 91 470 IPR016039 GO:0016746
Mtr4g4078 500 PIRSF Very_long_ch_3-ktacl-CoA_syn 10 500 IPR012392 GO:0006633|GO:0016020|GO:0016747
Mtr4g4078 500 PANTHER 3-KETOACYL-COA SYNTHASE 1 499 - -
Mtr4g4078 500 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 389 469 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4078 Mtr-Chr4 54681500 54683955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4078 1 500 Miscellaneous Gene Families AT2G26640 83.800 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4078 K15397 - gmx:100783247 942.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4078 4 54681500 54683955 Mtr4g4078 4 54681500 54683955 ECH
Mtr4g4078 4 54681500 54683955 Mtr2g1993 2 28894219 28896880 PCT