Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4009 ATGTCACTCACACGCTCCGCAATCCACCGCTTCCGTTACATCATCTACCACACTATCTCACCTCCACTTACTAATCATACCTTTCAATCTCAACTCCACCGCTCCTTTCTCTCTCATCCCATTCCTAAACCCTTCCATTTCCACTCTTCTTCTTACTCCTCCTCCTCCTCATCTTCTTGTTCCACCTTTGTCCGCGGTGGTGCCGATGACGATTATCCCACCGGTGACTTTGATTTTAAGCCGGTCACCGGCTTCAACAAATTTTTAGTCAAGCTCAAAATGCTAATAGCATTGCCATGGGAGCGTGTTCAACACGGCAGCGTCTTGAAAATCATTTTGCGAGGCCAGATATCTGATCAACTGAATAATAGATTCTCGAAGAAGGGGTTATCTCTTCCCCAAATTTGCGATAATTTGTTGAAAGCAGCTTATGATCCTCGTATTTCTGGTGTGTATCTTCAAATTGACAATTTAAATTGCGGTTGGGCTAAACTCGATGAAATTCGAAGACAGATCTTAAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTACATTGCTTGCGCATGTGAAGAAATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGATTCAGTGTTCAAGCGGCATTTGTCAAAGGTGTTTTTGACAACCTTGGAATTGAACCAAACGTTGAAAAATTTGGCAAATATAAAAGTGCAGGAGATCAACTAACCCGTAAAACCATGTCTGAAGATCACCGTGAGATGCTGACTGCATTACTGGATAATATCTATTCAAATTGGCTGGATAAAGTATCTTCCGCTAGAGGTAAAGAAAGAACAGATATTGAGAACTTCATAAATGAAGGTGTCTATCAAGTAGACAGACTGAAAGAAGAGGGTTTCATAACAAGCATACTCTATGATGATGAGGTTATCACTAAGTTGAAGGAGAGACTTCAGGTGAAAACAGTAAAAAAACTGCCTGTGGTTGATTTCAGAAAATACTCTGGAGTTAGAAAATGGACTGTTGGAATATCAGGTGGTAAAGATCTGATAGCTGTCATCCGAGCCTCAGGGACCATCCGTCGTACTGAGGGTCCATTTAGTGCCCCTAGCAAAGGTGTTATTGGAGAGAAGTTCATTGAGAAGATCCGTAGGGTCAGAGAGTCAAATAAATTCAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTCTGGCTGCCAAAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGATACTACATGGCAATGGGAGCAGGAGCTATTGTTGCAGAAAGTCTAACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAATTTAGCCTTGGGAAACTTTATGAGAAGATTGGTTTCAACAAAGAAATTATATCAAGGGGTAAATATGCCGAGCTCCTTGCAGCTGAACAACGTTCCTTTAGGCCACATGAAGCAGAGCTATTTGCCAAGTCTGCACAGAATTTTTATAAACAATTTCGTGATAAGGCGGCTTTTTCCAGATCAATGACTGTAGACAAGATGGAAGAGGTTGCACAAGGGAGGGTTTGGACCGGTAAGGATGCAGCATCCCATGGTTTGGTTGATGCTATTGGTGGGCTATCTCGTGCTATTGCTATAGCAAAATTGAAAGCTAATATACCTCAAGACAGACAGGTTACTGTTGTGGAGCTCTCTAGACCTAGTCCTTCTCTACCCGAGATTTTAAGTGGTCTTGGTAATTCTCTGGTTGGAGCGGACGAAAGACTTAAGGAACTACTAGAGGACTTGACATTTTCTGATGGAGTTCAAGCGCGAATGGATGGAATCATGTTTCAGAAATTGGAAGGAAATCCATCTGCTAACCCCATTTTGGCATTGATGAAAGATTACCTCAGTTCTGCTACATAG 1980 0.4177 MSLTRSAIHRFRYIIYHTISPPLTNHTFQSQLHRSFLSHPIPKPFHFHSSSYSSSSSSSCSTFVRGGADDDYPTGDFDFKPVTGFNKFLVKLKMLIALPWERVQHGSVLKIILRGQISDQLNNRFSKKGLSLPQICDNLLKAAYDPRISGVYLQIDNLNCGWAKLDEIRRQILNFRKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGFSVQAAFVKGVFDNLGIEPNVEKFGKYKSAGDQLTRKTMSEDHREMLTALLDNIYSNWLDKVSSARGKERTDIENFINEGVYQVDRLKEEGFITSILYDDEVITKLKERLQVKTVKKLPVVDFRKYSGVRKWTVGISGGKDLIAVIRASGTIRRTEGPFSAPSKGVIGEKFIEKIRRVRESNKFKAAIIRIDSPGGDALASDLMWREIRLLAAKKPVIASMSDVAASGGYYMAMGAGAIVAESLTLTGSIGVVTGKFSLGKLYEKIGFNKEIISRGKYAELLAAEQRSFRPHEAELFAKSAQNFYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKLKANIPQDRQVTVVELSRPSPSLPEILSGLGNSLVGADERLKELLEDLTFSDGVQARMDGIMFQKLEGNPSANPILALMKDYLSSAT* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4009 659 Gene3D - 353 502 - -
Mtr4g4009 659 PIRSF Protease_4_SppA 64 658 IPR004634 GO:0006465|GO:0008233|GO:0016021
Mtr4g4009 659 Gene3D - 503 626 - -
Mtr4g4009 659 Gene3D - 106 246 - -
Mtr4g4009 659 Gene3D - 248 343 - -
Mtr4g4009 659 CDD S49_SppA_67K_type 109 323 - -
Mtr4g4009 659 Pfam Peptidase family S49 175 327 IPR002142 GO:0006508|GO:0008233
Mtr4g4009 659 Pfam Peptidase family S49 426 576 IPR002142 GO:0006508|GO:0008233
Mtr4g4009 659 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 358 571 IPR004635 GO:0006508|GO:0008233
Mtr4g4009 659 PANTHER PROTEASE 4 51 657 - -
Mtr4g4009 659 SUPERFAMILY ClpP/crotonase 350 563 IPR029045 -
Mtr4g4009 659 CDD S49_Sppa_N_C 358 572 IPR002142 GO:0006508|GO:0008233
Mtr4g4009 659 SUPERFAMILY ClpP/crotonase 104 313 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4009 Mtr-Chr4 53905142 53913212 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4009 K04773 - gmx:100809623 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4009 4 53905142 53913212 Mtr4g4009 4 53905142 53913212 ECH
Mtr4g4009 4 53905142 53913212 Mtr2g2057 2 30392167 30403681 PCT