Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3916 ATGTCGAGAAAGTCAAGTGAAATTCTAGACGATCCCAAAGAAAGGGAAAAACAGAAGAATCTTGAAAATCATGCAGATGACTCGAGTTTGCTTATTTCTCAGCTCGACCGTGATGCATCAATCCATTGTCTCCTTCGGGTGTCAAGGTCTGATTATGGCTCAATCGCTGCATTAAACCGAAGTTTTCGATCACTTATTACTACTGGAGAATTATATCAACTTAGGCGAAAAATGGGCATAGTGGAACATTGGGTTTACTTTTCTTGTGATGTCCTTAAATGGGAGGCCTATGATCCAAATCGTGATCGGTTGATGCAACTGCCGAAAATGAGTTCTAATATATGTTTTATGCTTTCAGACAAGGAGTCACTAGCTGTTGGTACGGAGCTTCTTGTTTTTGGAAGAGAAATAACTGGCCTTGCCATATATAAGTATAGCATTCTGACAAATTCATGGTTGAAGGGAATGAAAATGAATACTCCTAGATGCTTGTTTGGTTCTGCCAGCCTCGGAGAAATTGCAATATTAGCCGGTGGTTGTGATCAACATGGCAACATATTGAGCTCTTCTGAGCTTTATAACTCAGATACCGGCACATGGGAGGTTCTTCCAGACATGAACACGCCAAGGAGAATGTGTTCAGCCGTGTTTATGGATGAAAAATTTTATGTCCTTGGCGGAGTTGGAGTTGACAAAACAACACAACTAACTTGTGGTGAAGAGTTTGATCTCAAGACGCGGAAATGGCGCAAAATACCTAACATGTGTCCACCGCGTAACGGAGGAGATGGTGCGAATGAGACACCTGTCAGTGGCGAGGCACCTCCTTTAATTGCAGTTGTAAAAGATGTATTGTACGCTGCTGATTATTCGCAACAAGAAGTAAAAAGATATGTTAAAGAAGAAAATTCATGGGTCACCATTGGAAGCCTCCCTGAGAGAGTAACCTCGGTAAATGGATGGGGAATGGCCTTTAGATCATGTGGAGATAAGCTAGTTGTCATTGGAGGTCCTAGTCTTTATGGTGGAATGGTAACAGAAGTCAATGCTTGGGTAGCAAACGAAGGTGCACCACAATGGAATTTGCTTGCCATTATCCAATCAGGAAGCTTTGTGTACAATTGTGCTGTGATGGGTTGTTGA 1143 0.4208 MSRKSSEILDDPKEREKQKNLENHADDSSLLISQLDRDASIHCLLRVSRSDYGSIAALNRSFRSLITTGELYQLRRKMGIVEHWVYFSCDVLKWEAYDPNRDRLMQLPKMSSNICFMLSDKESLAVGTELLVFGREITGLAIYKYSILTNSWLKGMKMNTPRCLFGSASLGEIAILAGGCDQHGNILSSSELYNSDTGTWEVLPDMNTPRRMCSAVFMDEKFYVLGGVGVDKTTQLTCGEEFDLKTRKWRKIPNMCPPRNGGDGANETPVSGEAPPLIAVVKDVLYAADYSQQEVKRYVKEENSWVTIGSLPERVTSVNGWGMAFRSCGDKLVVIGGPSLYGGMVTEVNAWVANEGAPQWNLLAIIQSGSFVYNCAVMGC* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3916 380 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 14 380 - -
Mtr4g3916 380 SUPERFAMILY Kelch motif 91 377 IPR015915 GO:0005515
Mtr4g3916 380 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 14 380 - -
Mtr4g3916 380 MobiDBLite consensus disorder prediction 1 22 - -
Mtr4g3916 380 SMART kelc_smart 173 220 IPR006652 GO:0005515
Mtr4g3916 380 SMART kelc_smart 221 268 IPR006652 GO:0005515
Mtr4g3916 380 SMART kelc_smart 129 172 IPR006652 GO:0005515
Mtr4g3916 380 Gene3D - 73 378 IPR015915 GO:0005515
Mtr4g3916 380 Pfam Kelch motif 209 255 IPR006652 GO:0005515
Mtr4g3916 380 Pfam Kelch motif 161 207 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3916 Mtr-Chr4 52906801 52908952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3916 35 254 Miscellaneous Gene Families AT4G33900 26.457 8.30e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3916 - - cam:101513734 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3916 4 52906801 52908952 Mtr4g3916 4 52906801 52908952 ECH
Mtr5g1589 5 17266626 17269487 Mtr4g3916 4 52906801 52908952 PCT