Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3844 ATGGAATATCAAAGATCCTTCAGCAACGACTCTAATAACTTCCAAAAAAAGTTAACTACCACACGTACTCTTTCTTCACAACACAGCCTCGCATCAATTCCTTCACTCAACTCAAACTCACAACAATTTCATAATTCTTCCTTCACATGCCTCACAACTCTGAAATTCCACACTTACATATCCTCTTTAACACTTGTCGGAAAATTTCTCTACACTGGTTCATCCAACACAGAAGTCACATCATGGAACCTTTCTCATGTTCATTCTCACCCTCAACAATCAATTAACACTAACACAATAGTATCTGGAAATGGTGCTGTGAAATCCATTGTAGTTCATTCAGACAAGCTTTTCACTGCTCACCAAGATAACAAAATCCGCGTTTGGAAAATCACCAATATCAACAACGAATCTCAACAACAAAAGTTCACCCATTTAGCCACACTCCCAACATTCATAGACCGTTTCACGAAAATCTTTATCCCGAAAAACCATGTTAATATTCGAAGGCACAAAAAATGCACATGGGTGCACCATGTTGACACAGTCTCATCTCTTGCCTTATCTAAAGATGGAACCTTATTGTATTCTGTTTCATGGGACAGAACAATCAAAGTGTGGAAAACCAAAGACTTGACATGTTTGGAATCATTGCAAAACGCACACGACGATGCAATAAACGCAATCACAGTTTCTAACGATGGATATGTTTACACCGGATCAACAGATAAAAAAATTAAGGTTTGGAAGAAAAATAAAGGAGATAAGAAACATTTGTTAGTTGATACTTTGGAGAAGCACAGATCTGGGATTAATGCATTGGCTCTTAACAGTGACGGTTCGGTTTTGTATTCCGGTGCATGTGATAGATCAATATTGGTATCTGAAAAAGGTGAAAATGGTAATTTGATAGTCATAGGTGCTCTACGTGGTCACACAAAGTCTATATTGTGTTTGGCTGTGGTTTCTGATTTGGTGTGCAGTGGTTCTGAGGATAAGACAATTCGAATTTGGCGAGGTAATACTAATAATGTTCTTAGAGAGTATTGTTGTTTGAGTGTTTTGGAAGGGCATAAAGGTCCAATTAAGTGCCTAACTATTGTGTTTGATCATTTTGATCAACCGTCTGAAGCATCTTTTCTTATCTACAGTGGAAGTTTGGACTGTGATATTAAGGTTTGGAAGATTTTTGTTCCTCTTCTATAA 1206 0.374 MEYQRSFSNDSNNFQKKLTTTRTLSSQHSLASIPSLNSNSQQFHNSSFTCLTTLKFHTYISSLTLVGKFLYTGSSNTEVTSWNLSHVHSHPQQSINTNTIVSGNGAVKSIVVHSDKLFTAHQDNKIRVWKITNINNESQQQKFTHLATLPTFIDRFTKIFIPKNHVNIRRHKKCTWVHHVDTVSSLALSKDGTLLYSVSWDRTIKVWKTKDLTCLESLQNAHDDAINAITVSNDGYVYTGSTDKKIKVWKKNKGDKKHLLVDTLEKHRSGINALALNSDGSVLYSGACDRSILVSEKGENGNLIVIGALRGHTKSILCLAVVSDLVCSGSEDKTIRIWRGNTNNVLREYCCLSVLEGHKGPIKCLTIVFDHFDQPSEASFLIYSGSLDCDIKVWKIFVPLL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3844 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 348 IPR001680 GO:0005515
Mtr4g3844 401 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 401 IPR045182 -
Mtr4g3844 401 Gene3D - 168 398 IPR015943 GO:0005515
Mtr4g3844 401 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Mtr4g3844 401 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Mtr4g3844 401 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Mtr4g3844 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 217 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 348 395 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 93 130 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 211 250 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 257 296 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 302 339 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 47 83 IPR001680 GO:0005515
Mtr4g3844 401 SMART WD40_4 169 208 IPR001680 GO:0005515
Mtr4g3844 401 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Mtr4g3844 401 Pfam WD domain, G-beta repeat 214 250 IPR001680 GO:0005515
Mtr4g3844 401 Pfam WD domain, G-beta repeat 350 395 IPR001680 GO:0005515
Mtr4g3844 401 Pfam WD domain, G-beta repeat 177 208 IPR001680 GO:0005515
Mtr4g3844 401 Pfam WD domain, G-beta repeat 262 293 IPR001680 GO:0005515
Mtr4g3844 401 Gene3D - 35 167 IPR015943 GO:0005515
Mtr4g3844 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 250 - -
Mtr4g3844 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 208 - -
Mtr4g3844 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 259 IPR001680 GO:0005515
Mtr4g3844 401 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 401 - -
Mtr4g3844 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Mtr4g3844 401 SUPERFAMILY WD40 repeat-like 63 396 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3844 Mtr-Chr4 52139904 52141440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3844 169 396 Miscellaneous Gene Families AT5G08390 25.000 9.52e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3844 - - gmx:100801906 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3844 4 52139904 52141440 Mtr3g2488 3 38802221 38803848 ECH
Mtr4g3844 4 52139904 52141440 Mtr4g3844 4 52139904 52141440 ECH
Mtr4g3844 4 52139904 52141440 Mtr3g2488 3 38802221 38803848 PCT