Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2488 ATGGAATATCACTATGACAGTGGCTCTTCCTCATCTCACTCCAACCACTACCTTCAACCTCAACAATTAGGCTCAACCTCCCTCACTTCACAACGCAGCCTCCTCTCAGTTCCTTCCCTCAACCCTCGTCACAATCCCCACATCAACCACACTTCCCACCTCATCACAACCCTCAAATCCCACAATAACAACTCTTCCTACACATCCTCTCTCACTCTCTTCGGCAAATTCCTCCTCACCGGTTCATCCGACAGAGAAATCACAACATGGAACAGAACCACCTATGAAGAAGACACAACAACCAACAATAAAGTAATAGCAGGAAAAGGTGCTGTTAAATCCTTAGTAATTCAATCAAACAAAAACACCCTTTTCAGTGCTCATCAAGACCGTAAAATCCGTGTCTGGAAACTAACCAACGACCAAACAAAATACACTCATGTAGCAACACTTCCAACACTTGGTGACCGTGCATCCAAAATCTTAATCCCAAAAAACCATGTCCAAATTCGTAGACACAAAAAATGCACGTGGGTTCATCATGTGGACACTGTTTCTTCACTTGCTCTGTCTAAAGATGGAAAGTTTTTGTACTCTGTTTCATGGGACAGAACAATCAAAATCTGGAGAACTAAAGATTTCACTTGTTTGGAATCAATAACCAACGCACACGATGATGCTATAAACGCGGTTGTTGTTTCTTATGATGGAACTTTCTACAGTGGATCAGCTGATAAAAGAATCAAAGTGTGGAAAAATCTTCAAGGTGATGATCATAACAAAAAGAAACACAAACATTCTCTTGTTGATACCTTGGAGAAACATAATTCTGGAATCAATGCTTTGGTTTTGAGCAGTGATGAATCTATTCTGTATTCTGGTGCTTGTGATAGATCAATATTGGTATGGGAGAAAGAAGATGGCGACAACGACGACGAAAATGGAAAAATGGTTCTGGTTGGTGCATTAAGAGGACATAAAAATTCAATATTGTGTTTAGCTGTTGTGTGGGATTTTGTGTGTAGTGGTTCAGCTGATAAAACCATAAGAATTTGGAGAGGTGTTGGTAGAGATTATTGTTGTTTATCTATTTTGGAAGGGCATCAAGGTTCAGTTAAGTGTTTAACTGCAGTAGTTGAACATTGTGATGATAACTCTGAATCAGAAGAACCATCTTTTCTAGTTTATAGTGGTAGTTTGGACTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTGCTATCTAA 1245 0.3952 MEYHYDSGSSSSHSNHYLQPQQLGSTSLTSQRSLLSVPSLNPRHNPHINHTSHLITTLKSHNNNSSYTSSLTLFGKFLLTGSSDREITTWNRTTYEEDTTTNNKVIAGKGAVKSLVIQSNKNTLFSAHQDRKIRVWKLTNDQTKYTHVATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGKFLYSVSWDRTIKIWRTKDFTCLESITNAHDDAINAVVVSYDGTFYSGSADKRIKVWKNLQGDDHNKKKHKHSLVDTLEKHNSGINALVLSSDESILYSGACDRSILVWEKEDGDNDDENGKMVLVGALRGHKNSILCLAVVWDFVCSGSADKTIRIWRGVGRDYCCLSILEGHQGSVKCLTAVVEHCDDNSESEEPSFLVYSGSLDCDIKVWQIFVPAI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2488 414 CDD WD40 54 408 - -
Mtr3g2488 414 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Mtr3g2488 414 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Mtr3g2488 414 Pfam WD domain, G-beta repeat 360 407 IPR001680 GO:0005515
Mtr3g2488 414 Pfam WD domain, G-beta repeat 111 137 IPR001680 GO:0005515
Mtr3g2488 414 Pfam WD domain, G-beta repeat 320 352 IPR001680 GO:0005515
Mtr3g2488 414 Pfam WD domain, G-beta repeat 179 209 IPR001680 GO:0005515
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 313 IPR001680 GO:0005515
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 209 - -
Mtr3g2488 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 412 IPR045182 -
Mtr3g2488 414 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 10 412 - -
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 352 - -
Mtr3g2488 414 SMART WD40_4 51 91 IPR001680 GO:0005515
Mtr3g2488 414 SMART WD40_4 171 210 IPR001680 GO:0005515
Mtr3g2488 414 SMART WD40_4 316 353 IPR001680 GO:0005515
Mtr3g2488 414 SMART WD40_4 99 137 IPR001680 GO:0005515
Mtr3g2488 414 SMART WD40_4 213 252 IPR001680 GO:0005515
Mtr3g2488 414 SMART WD40_4 265 304 IPR001680 GO:0005515
Mtr3g2488 414 SMART WD40_4 358 408 IPR001680 GO:0005515
Mtr3g2488 414 Gene3D - 39 154 IPR015943 GO:0005515
Mtr3g2488 414 Gene3D - 167 411 IPR015943 GO:0005515
Mtr3g2488 414 PRINTS G protein beta WD-40 repeat signature 124 138 IPR020472 -
Mtr3g2488 414 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Mtr3g2488 414 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 352 IPR001680 GO:0005515
Mtr3g2488 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Mtr3g2488 414 SUPERFAMILY WD40 repeat-like 51 408 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2488 Mtr-Chr3 38802221 38803848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2488 120 408 Acyl Lipid Metabolism Gene Families AT3G18860 27.055 2.28e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2488 - - gmx:100777242 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3844 4 52139904 52141440 Mtr3g2488 3 38802221 38803848 ECH
Mtr3g2488 3 38802221 38803848 Mtr3g2488 3 38802221 38803848 ECH
Mtr4g3844 4 52139904 52141440 Mtr3g2488 3 38802221 38803848 PCT