Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3816 ATGCCAAGTGTTGTTCCAATTGAAGGAAATAAAATGAATGAACTTGAGAACCCTTCACCCTCTAAGAACATCTATAATAAAATCAATTCACCAAGAATACCATCGAGCCCACAAACACCTAGAAGTGTTGAGAGGTTTCATGAAATTGTACATGATGCAAGACGTTCGCGTCGAACACGCTCAAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTTTAACTGATTCAGAATTTAGCCATATTAGTGGAGAACAAATGAGGAAGTTGGAGATAGTGAAAGAGGAAATGGTGAAAAAGGTAGTCAGGGACTCTAGCAGTGAAACACCATCAATATCAAGAGCTAAGGGAAAAAATCCTCCTGCAAAACCTCCTGTTGAAAGGAAGAATGGAAACAATCCTTTGAGAAAACAAAGTACAACAGTTACTAATCGTGCGGTAAAACCTAAGATTGCTTCTATTGGAAGATCAAGGTCACAAAGTCGAGTCGACGATTCTAAGGAATCAACATTTGATAATCCTGAGCTTGGACCATTTTTACTAAAGAAAGCAAGGGATTTGATTTCGTTAGGAGAGAACCCGAGGAAAGCTCTCGAGTTATCACTTCAAGCGACGAAATTGTTTGAGAAATCTGCGAATGGGAAACCGAGTTTGGATCTGGTTATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGTCATTATAATGAGGCAATTCCAATTTTAGAGCGATCAATCGAAATTCCTGCCGTTGAGGAAGGCAAGCAACATGCTATTGCGAAATTCGCCAGTCACATGCAACTTGGAGACACTTATGCTATGCTAGGCCAACTTGAGAATTCAATTATGTGTTACAACAATGGGTTGGAAGTACAAAGAAAGGTTTTGGGAGTAACTGATCCAAGAGTTGGTGAAACTTGTAGATACATAGCAGAAGCTAATTTTCAAGCATTGCAATTTGATGAGGCTGAGAGGCTGTGTCAAATTGCTCTTGATATTCATAGAGAAAATGGTTCACCCTCTTCTCTTGAAGAGGTGGCGGATAGAAGATTGATAGGTCTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTGGAGCACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAAGTGGAAGTGGCGTCTGTTGATTGCAGCATTGGAGACACATTCCTATCATTGGCTCGATACGATGAGGCCATCTTGGCATATAAAAAGGCGTTAGCGGTTTTCAAGACTCACAAAGGAGGGAATCATCCTTCGGTTGGATCGGTCTTAGTACGTTTGGCTGAGTTGTATAATAGGACATGGAAGGTAAGGGAATCAAAATCATATTGTGAAAATGCACTTAAAATCTATGAAAATCCCATGCCTGGTGTCCCTTCTGAGGAGATTGCTAGTGGTTTTGTGAATGTTGCAGCTATTTATGAGTCAATGAATGAGCTTGAACAAGCACTCGAGTTACTGCACAAGGCATTAGAGATACATAATGATGCCCCTGGCCAACAGAACACAATTGCAGGAATTGAAGCTCAAATGGGGGTCATATACTATGTGTTGGGAAACCAGACTGAATCTTACAATGCTTTCAAGAATGCCGTCTCAAAGCTTCGCGCCACAGGAGAGAAAAAATCGGCTTTCTTTGGTTTTGTTCTTAATCAAATGGGTCTTTGTTGTGTGCAACTTAACGCCTTGAGTGAGGCTGTCAAATTATTCGAAGAAGCGAAGATTGTTTTGGAACAAGAGTATGGTCCTTGTCACCCTGAAACTCTTGGCGTATATAGCAATCTTGCTGGCACATATGATGCAATTGGCAGGGTGGACGATGCAATTGATATTATAGAGTACATTGTAGTTGTGAGGGAGGAAAAACTTGGGACAGCACACTTTGATGTTGTTGATGAGAAGAGAAGGTTGGATGAGTTGTTGAAGGAAACAGGCAGAGTTCGGAAGAGAAAAACCAAGTCACTTGAGATTCTTCTTGATGTTAATGAGGACTAA 2019 0.4061 MPSVVPIEGNKMNELENPSPSKNIYNKINSPRIPSSPQTPRSVERFHEIVHDARRSRRTRSSQSFGSDSDWSLTDSEFSHISGEQMRKLEIVKEEMVKKVVRDSSSETPSISRAKGKNPPAKPPVERKNGNNPLRKQSTTVTNRAVKPKIASIGRSRSQSRVDDSKESTFDNPELGPFLLKKARDLISLGENPRKALELSLQATKLFEKSANGKPSLDLVMCLHVTAAIYCSLGHYNEAIPILERSIEIPAVEEGKQHAIAKFASHMQLGDTYAMLGQLENSIMCYNNGLEVQRKVLGVTDPRVGETCRYIAEANFQALQFDEAERLCQIALDIHRENGSPSSLEEVADRRLIGLICETNGNHEAALEHLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGGNHPSVGSVLVRLAELYNRTWKVRESKSYCENALKIYENPMPGVPSEEIASGFVNVAAIYESMNELEQALELLHKALEIHNDAPGQQNTIAGIEAQMGVIYYVLGNQTESYNAFKNAVSKLRATGEKKSAFFGFVLNQMGLCCVQLNALSEAVKLFEEAKIVLEQEYGPCHPETLGVYSNLAGTYDAIGRVDDAIDIIEYIVVVREEKLGTAHFDVVDEKRRLDELLKETGRVRKRKTKSLEILLDVNED* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3816 672 MobiDBLite consensus disorder prediction 100 170 - -
Mtr4g3816 672 Coils Coil 568 588 - -
Mtr4g3816 672 MobiDBLite consensus disorder prediction 62 77 - -
Mtr4g3816 672 PANTHER KINESIN LIGHT CHAIN 1 672 - -
Mtr4g3816 672 Pfam Tetratricopeptide repeat 557 619 - -
Mtr4g3816 672 SMART tpr_5 597 630 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 429 462 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 263 296 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 220 253 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 555 588 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 387 420 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 305 338 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 513 546 IPR019734 GO:0005515
Mtr4g3816 672 SMART tpr_5 472 505 IPR019734 GO:0005515
Mtr4g3816 672 Coils Coil 485 505 - -
Mtr4g3816 672 MobiDBLite consensus disorder prediction 1 77 - -
Mtr4g3816 672 Pfam Tetratricopeptide repeat 265 294 IPR019734 GO:0005515
Mtr4g3816 672 Pfam Tetratricopeptide repeat 392 415 IPR019734 GO:0005515
Mtr4g3816 672 Gene3D Tetratricopeptide repeat domain 373 548 IPR011990 GO:0005515
Mtr4g3816 672 Gene3D Tetratricopeptide repeat domain 165 264 IPR011990 GO:0005515
Mtr4g3816 672 ProSiteProfiles TPR repeat profile. 472 505 IPR019734 GO:0005515
Mtr4g3816 672 MobiDBLite consensus disorder prediction 44 61 - -
Mtr4g3816 672 Gene3D Tetratricopeptide repeat domain 265 372 IPR011990 GO:0005515
Mtr4g3816 672 MobiDBLite consensus disorder prediction 14 42 - -
Mtr4g3816 672 Gene3D Tetratricopeptide repeat domain 549 647 IPR011990 GO:0005515
Mtr4g3816 672 SUPERFAMILY TPR-like 201 628 IPR011990 GO:0005515
Mtr4g3816 672 Pfam Tetratricopeptide repeat 227 249 IPR019734 GO:0005515
Mtr4g3816 672 Pfam Tetratricopeptide repeat 476 506 IPR019734 GO:0005515
Mtr4g3816 672 MobiDBLite consensus disorder prediction 131 146 - -
Mtr4g3816 672 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Mtr4g3816 672 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3816 Mtr-Chr4 51898166 51900476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3816 - - gmx:100813461 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3816 4 51898166 51900476 Mtr3g2466 3 38604231 38608351 ECH
Mtr4g3816 4 51898166 51900476 Mtr4g3816 4 51898166 51900476 ECH
Mtr4g3816 4 51898166 51900476 Mtr3g2466 3 38604231 38608351 PCT