Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2466 ATGGACATTCTTTGTGATGATGATAAGAAGGAAATAAAATTAGAAGAAGCCAAAGGGATTCTGGATCCTCTGAGAGAATTAAAGATGCCGGGAATTGTTACAAACGGGGTTCATGACGATGGGGAAGTTAATGAGATGAATGGGAACCGTTCTCCCACTAAGGCAAGCTTAACTCCAATCAAGTCTCCAAGGAGTTCAATGAGCCCGCAGAGACGTCAAAGTGTCGGTCCTAATTTCCAGGATGATGGGGTTGTTGAGCCTTCAATCGAGCAGCTTTATGAAAATGTGTGTGATATGCAGAGTTCTGATCAGTCGCCCTCAAGACAAAGTTTTGGATCCGATGGCGATGAGTCTAGAATTGATTCGGAGTTGCACCATTTGGTTGGGGGACGGATGAGGGAGTTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGGTGGGAAGAAGGCCAGGAGAGAGTTCTAGTGGGGAAACATCTTCTGGAATGGGTAATTTATCTGATGATAAGAAGATGGATATGGTGGCTGAGATTCAATCTGGTAGTAAAAGTCCGGTGATTGAGATTCAATCTGGCAGTAAAAGTCCGGTGGTTAAGACACGATCTAGTAGTAAAAGTCCGGTTTCCTCAGAAAAAATTGTCAAACCACTGAATTCAAGGTTGGGCTCTGACACTTCACCAAGATCAAAACCCAAAGGAAAAAGTCCTCCTGCTAAAGCTCCTCTGGAGAGAAAGAATGATCAGCCTTTGAGAAAACAAACTAGAGGAGTTAATGGCGTGAAGAATTCAAAGAATTCTCCTTTGGGAAAGTCGGTGTCAATGAGTCGCGTTGAGAATTCGGCTGAATCAGCATTAGATAAACCAGAGCAAGCACCGATATTACTAAAGCAAGCAAGAGATCTTATGTCAACTGGAGATAATCCGCACAAAGCTCTTGAGTTGGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGGCAATGGGAAGCCGAGTTTGGAACTGGTTATGTGTTTACATGTTACCGCAGCAATATATTGCAGCCTGGGTCGATATAGCGAGGCAATTCCCATTCTTGAGCGTTCGATTGAGATTCCTGATATCGGGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTTGGAGACACCTATGCTATGTTGGGCCAGCTTGAGAATTCAATAATGTTCTACACTGCTGGGTTTGAAGTCCAGAGGCATATTTTGGGAGAAACAGACCCAAGAGTTGGTGAAACTTGTCGGTATTTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGGAGCTCTGTCAAATGGCTCTTGACATTCACAGAGAAAATAGTTCGGCCCCATCTATTGAAGAAGCTGCTGATAGGAGGCTCATGGGTCTTATATGTGAAACAAAGGGGAATCATGAAGCAGCTCTTGAACACCTTGTTTTAGCCAGCATGGCAATGGTTGCAAATGGCCAAGAAGCGGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCTCGATATGACGAGGCTGTCTTTGCATATGAAAAAGCGCTAGCAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCAGCAGTAGGGTCGGTCTTTGTACGTTTGGCCGATTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAGTCGTATTGCGATAAAGCACTTAAAATATATGAGAATCCAATGCCTGGAGTTACTCCAGAGGAGATTGCTAGCGGTCTTACAAATCTGTCAAGTATCTATGAGTCAATGAATGAGGTTGATCAGGCACTCAAGTTACTGCAGAAAGCATTGGAGATATATAATGATGCCCCCGGTCAGCAAGGAACAATAGCAGGAATCGAAGCTCAGGTGGGGGTTATGTACTACATGTTGGGAAACTATACTGAATCTTATAACACTTTGAAGAAAGCAATCGCAAAACTTCGTGCTATTGGAGAGAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAATTGGGGCTTGCCTGTGTGCAGCGTTATGCCTTAAGGGAAGCTATAGAATTATTTGAGGAAGCAAAGAGTGTTTTGGAACATGAGTTGGGGCCTTATCACCCTGAAACGCTTGGAGTATATAGTAATCTTGCAGGCACGTACGACGCAATTGGAAGGCTGGATGATGCAATTCTAACTTTGGAGCACGTTGTTAGTATGAGGGAGGAAAAGCTTGGGACAGCGAATCCCGACGTGGATGATGAAAAGAGAAGGTTGAGTGAGTTGTTGAAGGAAGCCGGTAAAGTTCGAAGCAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACGGCGATGCTCACACTTTAAACAACCTTGTCATCAAGGCCTAA 2388 0.438 MDILCDDDKKEIKLEEAKGILDPLRELKMPGIVTNGVHDDGEVNEMNGNRSPTKASLTPIKSPRSSMSPQRRQSVGPNFQDDGVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVEVGRRPGESSSGETSSGMGNLSDDKKMDMVAEIQSGSKSPVIEIQSGSKSPVVKTRSSSKSPVSSEKIVKPLNSRLGSDTSPRSKPKGKSPPAKAPLERKNDQPLRKQTRGVNGVKNSKNSPLGKSVSMSRVENSAESALDKPEQAPILLKQARDLMSTGDNPHKALELALQAMKLFEKFGNGKPSLELVMCLHVTAAIYCSLGRYSEAIPILERSIEIPDIGESQQHALAKFAGHMQLGDTYAMLGQLENSIMFYTAGFEVQRHILGETDPRVGETCRYLAEANVQALQFNEAEELCQMALDIHRENSSAPSIEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEAEVASVDCSIGDTYLSLSRYDEAVFAYEKALAVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYCDKALKIYENPMPGVTPEEIASGLTNLSSIYESMNEVDQALKLLQKALEIYNDAPGQQGTIAGIEAQVGVMYYMLGNYTESYNTLKKAIAKLRAIGEKKSSFFGIALNQLGLACVQRYALREAIELFEEAKSVLEHELGPYHPETLGVYSNLAGTYDAIGRLDDAILTLEHVVSMREEKLGTANPDVDDEKRRLSELLKEAGKVRSRKVRSLENLFDGDAHTLNNLVIKA* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2466 795 SMART tpr_5 669 702 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 711 744 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 627 660 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 543 576 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 334 367 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 501 534 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 377 410 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 419 452 IPR019734 GO:0005515
Mtr3g2466 795 SMART tpr_5 586 619 IPR019734 GO:0005515
Mtr3g2466 795 Pfam MalT-like TPR region 430 623 IPR041617 -
Mtr3g2466 795 MobiDBLite consensus disorder prediction 32 289 - -
Mtr3g2466 795 ProSiteProfiles TPR repeat profile. 501 534 IPR019734 GO:0005515
Mtr3g2466 795 ProSiteProfiles TPR repeat profile. 586 619 IPR019734 GO:0005515
Mtr3g2466 795 Coils Coil 752 772 - -
Mtr3g2466 795 Pfam Tetratricopeptide repeat 670 743 - -
Mtr3g2466 795 Pfam Tetratricopeptide repeat 293 363 - -
Mtr3g2466 795 Gene3D Tetratricopeptide repeat domain 485 662 IPR011990 GO:0005515
Mtr3g2466 795 Gene3D Tetratricopeptide repeat domain 663 773 IPR011990 GO:0005515
Mtr3g2466 795 SUPERFAMILY TPR-like 498 618 IPR011990 GO:0005515
Mtr3g2466 795 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 29 783 - -
Mtr3g2466 795 Gene3D Tetratricopeptide repeat domain 275 484 IPR011990 GO:0005515
Mtr3g2466 795 MobiDBLite consensus disorder prediction 46 77 - -
Mtr3g2466 795 MobiDBLite consensus disorder prediction 251 279 - -
Mtr3g2466 795 MobiDBLite consensus disorder prediction 182 212 - -
Mtr3g2466 795 MobiDBLite consensus disorder prediction 236 250 - -
Mtr3g2466 795 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 29 783 - -
Mtr3g2466 795 MobiDBLite consensus disorder prediction 94 113 - -
Mtr3g2466 795 MobiDBLite consensus disorder prediction 114 150 - -
Mtr3g2466 795 Coils Coil 599 619 - -
Mtr3g2466 795 SUPERFAMILY TPR-like 287 485 IPR011990 GO:0005515
Mtr3g2466 795 SUPERFAMILY TPR-like 630 768 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2466 Mtr-Chr3 38604231 38608351 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2466 - - mtr:MTR_3g077950 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3816 4 51898166 51900476 Mtr3g2466 3 38604231 38608351 ECH
Mtr3g2466 3 38604231 38608351 Mtr3g2466 3 38604231 38608351 ECH
Mtr4g3816 4 51898166 51900476 Mtr3g2466 3 38604231 38608351 PCT