Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3770 ATGGATCCCCACCCAAACCCAGGAACCTACCCAATCCTCAATTACGTCATGTCCCGTCTCCCATCCTTCACCTCCAAATCCTCACCATCTAAATCCGATGTCGAACAACCACCACCCTCCTCCTCAATCATCGGCCAAATGCCCAATCTCACAGACCCAAAACTCCTCGCCGCGATGACCCACGCCATCTCCGACGTCTCACAAGCCCGATCAGTCCTCAACCTCATAGGCGATCGGCCCACCCACGAAGAAGTCGACAATGCGAAGGCTAAACTCGTCGACCTCGAAGCACATTTGTTACGTCAATTGGAAGAGATTGTTGCCCTTCCTCGGCCTCCTGAGATTGATGAACAAAAGTGGATAATTCATGTTACGGAAAGAGAAACTAAATGTAGAGAAAATGTTGAGAATGAGAAGCGTGGTTATAAAGAGCTTTTGCAAAAAGATGAGATGCATGAAGCTTATGAGAAGCTACTTAAGGATGCGGAGATTAGGCTTGTGAAGATTTATGAGAATGATGGTGGAGATGGTAATGATGATAATGACGTGGTTGAAGATAAGGAATGTGAAGAACGTGTTATGAGGATATTGCAGGAGGTACGTGAGAAAGATGGTCAGCGTGTTGATCTTTCCGGGCAACGGTTGACGATGTTGCCGGAGGCGGTTTGTCAAGTTTCTTCCTTGGTTGTGCTTAACCTCTCCACTAATAAGCTTTCGGTGATTCCTGACACAATATCAGGATTGCTAAATCTAGAGGATCTTAATATCTCTTCAAATATTTTGAAGTCACTTCCAGATTCAATTGGCTTTTTACAAAAGTTGAAAATTCTCTCTGTGTCTGGAAATAAGTTGAGTGCTCTTCCTGATTCCATCGGTCAGTGCAGATCGTTGGTGGAGCTGGATGCCAGCTTTAACAGTCTGTCATATTTGCCAACAAACATTGGATTTGAATTACAGAATTTACAGAAGCTCTTGATTGGTTTAAACAAGATACGATCCCTTCCCTCGTCTATTTGCGAGATGAAGTCACTGCGCTATCTAGATGCGCACTTTAATGAACTACATGGGCTTCCTATTGCAATCGGGAAATTGACTAGTCTTGAATTTCTAAACCTGAGTAGTAACTTCAGCGATCTTCAAGAAATACCAGAGACATTTGGTGATTTGAGTAGCCTCAAGGAATTGGATCTTAGCAACAATCAAATTCATGCACTTCCTGATACATTTGGCCGCCTTGATAGTTTAATCAAGCTAAACTTAGAGCAGAACCCTATTGAATTGCCACCTATGGAGATTGTAAATGAAGGTGTCCAAGCCATCAAGTCTTACATGGCCAAGAGGTGGATTGATATATTGGCAGAGGAAGAGAGGAAAAAGACACATGAATCGGAAGAACAAGGACAGAGTGGTTGGCTAACAAGAAGTCTCTCCATGTTGAAGAACGTTCCTGGAAATGTAACTGAGTATATTGAAAGTGTCGTCTCCCCAAAAACTCCCAAAACTCCCAAGACTCCTAGAAGTAATTTTCTTGATCAGGAACTATAA 1545 0.4304 MDPHPNPGTYPILNYVMSRLPSFTSKSSPSKSDVEQPPPSSSIIGQMPNLTDPKLLAAMTHAISDVSQARSVLNLIGDRPTHEEVDNAKAKLVDLEAHLLRQLEEIVALPRPPEIDEQKWIIHVTERETKCRENVENEKRGYKELLQKDEMHEAYEKLLKDAEIRLVKIYENDGGDGNDDNDVVEDKECEERVMRILQEVREKDGQRVDLSGQRLTMLPEAVCQVSSLVVLNLSTNKLSVIPDTISGLLNLEDLNISSNILKSLPDSIGFLQKLKILSVSGNKLSALPDSIGQCRSLVELDASFNSLSYLPTNIGFELQNLQKLLIGLNKIRSLPSSICEMKSLRYLDAHFNELHGLPIAIGKLTSLEFLNLSSNFSDLQEIPETFGDLSSLKELDLSNNQIHALPDTFGRLDSLIKLNLEQNPIELPPMEIVNEGVQAIKSYMAKRWIDILAEEERKKTHESEEQGQSGWLTRSLSMLKNVPGNVTEYIESVVSPKTPKTPKTPRSNFLDQEL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3770 514 Coils Coil 85 105 - -
Mtr4g3770 514 Pfam Leucine rich repeat 250 307 IPR001611 GO:0005515
Mtr4g3770 514 Pfam Leucine rich repeat 383 425 IPR001611 GO:0005515
Mtr4g3770 514 SUPERFAMILY L domain-like 207 425 - -
Mtr4g3770 514 Gene3D Ribonuclease Inhibitor 378 440 IPR032675 -
Mtr4g3770 514 MobiDBLite consensus disorder prediction 23 48 - -
Mtr4g3770 514 SMART LRR_bac_2 318 337 - -
Mtr4g3770 514 SMART LRR_bac_2 225 244 - -
Mtr4g3770 514 SMART LRR_bac_2 389 408 - -
Mtr4g3770 514 SMART LRR_bac_2 248 267 - -
Mtr4g3770 514 SMART LRR_bac_2 294 313 - -
Mtr4g3770 514 SMART LRR_bac_2 364 385 - -
Mtr4g3770 514 SMART LRR_bac_2 341 360 - -
Mtr4g3770 514 SMART LRR_bac_2 271 290 - -
Mtr4g3770 514 SMART LRR_typ_2 364 388 IPR003591 -
Mtr4g3770 514 SMART LRR_typ_2 271 294 IPR003591 -
Mtr4g3770 514 SMART LRR_typ_2 295 317 IPR003591 -
Mtr4g3770 514 SMART LRR_typ_2 389 412 IPR003591 -
Mtr4g3770 514 SMART LRR_typ_2 225 247 IPR003591 -
Mtr4g3770 514 SMART LRR_typ_2 318 341 IPR003591 -
Mtr4g3770 514 SMART LRR_typ_2 248 269 IPR003591 -
Mtr4g3770 514 ProSiteProfiles Leucine-rich repeat profile. 227 249 IPR001611 GO:0005515
Mtr4g3770 514 ProSiteProfiles Leucine-rich repeat profile. 391 412 IPR001611 GO:0005515
Mtr4g3770 514 Coils Coil 152 172 - -
Mtr4g3770 514 MobiDBLite consensus disorder prediction 491 514 - -
Mtr4g3770 514 Gene3D Ribonuclease Inhibitor 118 307 IPR032675 -
Mtr4g3770 514 Gene3D Ribonuclease Inhibitor 308 377 IPR032675 -
Mtr4g3770 514 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 495 - -
Mtr4g3770 514 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 495 - -
Mtr4g3770 514 ProSiteProfiles Leucine-rich repeat profile. 250 271 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3770 Mtr-Chr4 51472889 51477184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3770 208 449 Receptor kinase-like Gene Family AT5G62230 30.980 8.87e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3770 - - gmx:100782818 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3770 4 51472889 51477184 Mtr4g3770 4 51472889 51477184 ECH
Mtr4g3770 4 51472889 51477184 Mtr3g2422 3 38054126 38058376 PCT