Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2422 ATGGATCCTAATCCAGGAACCTTCCCGATCCTCTCCTACGTCATGTCCCGTCTCCCATCCTTAACCACCAAACCCACCGCCACCACCTCCGACACCGAATTATACGACATCGAACAGCCACGCATCGTCGACCAAATGCCAAACCTAGCAGATCCCGAATTAATCGCCGCCATGGCCGGTGCCATCGACGACGTTCAACAGGCCAGGGCCATTCTCAAACTTATCGGCGAACGGCCCACTCATGAAGAAGTCGACCACGCCAAAACCAAACTAACTGATATAGAAGCCGAACTTTCGCGACAACTGGAAGGAATTGTTCTGTTATCGAGGCCGACGGAGATCGAGGTTCATGGATGGAGAGCACATCTGGCGGAGAAGGAGAAACAGTGTAGAGAGGAAGCTGAAAAGGAAAAGCGTGTTTGGAAATCACTTATTCAGCTTGATGAGATGCATGAGGCGTATGAGAAGCTTCTTAAGAGTGCTGAGAAGAAGTTGGTTAGAATGTATGATGGAGATACCGGTGATGTTGGAGGAGAGGGTGATGGTAGTGATGAAGTGGATGAAGTGGTTGTTGGGATTTTGCAGGAAGCTGATGGGAAAGGAATGGAAAGGATTGAGATTTCGGATCGGAAATTGAAGGTGTTGCCGGAAGCTTTTGGGAGGATTCCTGGTTTGCTTGTGCTTGACGCTTCTAAGAATCTGCTTTCGGTGATTCCTGACTCAATAGTTGGATTGCAAAATCTGGAGGAGCTTAATCTCTCTGCAAATCATTTGGAATCACTGCCCGATTCAATTGGATTTCTACAAAAGTTGAAATTGCTCAATGTTTCTGGAAACAAGCTTACTGCCCTTCCTGATGCCATTTGTCAGTGCAGGTCATTGGTGGAGCTGGATGTAAGCTTCAACGATCTGTCATACTTGCCAACAAACATTGGGTATGAATTACCAAACTTGAAGAAACTCATGATTCAGTTGAACAAAATTCGATCTCTTCCCTCATCTATTTGTGAGTTGAAGTCGTTATGCTATTTGGATGCTCACGTCAATGAGCTACATGGGCTTCCAGCAGCATTTGGGAGACTGACTACTCTGGAAATTCTCAACTTGAGCAGTAATTTCGCTGATCTTAAAGAACTTCCAGAGACATTTGGCGAATTGACTAATCTCAAGGAATTGGATGTCAGTAATAATCAGATTCATGCACTTCCAGATACATTTGGTTGCCTTGATAATTTGACCAAGCTCAACTTGGAACAGAATCCTCTTGAACTGCCACCAGTGGAGATTGTAAACCAAGGGGTCCAAGCCATAAAAACTTTTATGGCCAAGAGGTGGATTGCTATGTTGGAAGAGGAAGAACTAAAAAGCAATCAAGAAATGCAAGAACAAGGAGAGGGTGGCTGGTTAACCAGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAGTTGGGTATATTGGAACTGCTGTTGGATCTCCTATGTCACCCAAATCTCCCACCACAGATGCTTATCTTAATCAGCAGCTTTGA 1533 0.4501 MDPNPGTFPILSYVMSRLPSLTTKPTATTSDTELYDIEQPRIVDQMPNLADPELIAAMAGAIDDVQQARAILKLIGERPTHEEVDHAKTKLTDIEAELSRQLEGIVLLSRPTEIEVHGWRAHLAEKEKQCREEAEKEKRVWKSLIQLDEMHEAYEKLLKSAEKKLVRMYDGDTGDVGGEGDGSDEVDEVVVGILQEADGKGMERIEISDRKLKVLPEAFGRIPGLLVLDASKNLLSVIPDSIVGLQNLEELNLSANHLESLPDSIGFLQKLKLLNVSGNKLTALPDAICQCRSLVELDVSFNDLSYLPTNIGYELPNLKKLMIQLNKIRSLPSSICELKSLCYLDAHVNELHGLPAAFGRLTTLEILNLSSNFADLKELPETFGELTNLKELDVSNNQIHALPDTFGCLDNLTKLNLEQNPLELPPVEIVNQGVQAIKTFMAKRWIAMLEEEELKSNQEMQEQGEGGWLTRSTSWLKNVSGNVVGYIGTAVGSPMSPKSPTTDAYLNQQL* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2422 510 Gene3D Ribonuclease Inhibitor 196 458 IPR032675 -
Mtr3g2422 510 SMART LRR_typ_2 315 338 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 292 314 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 361 385 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 268 291 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 245 266 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 222 244 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 409 432 IPR003591 -
Mtr3g2422 510 SMART LRR_typ_2 386 408 IPR003591 -
Mtr3g2422 510 Coils Coil 144 164 - -
Mtr3g2422 510 ProSiteProfiles Leucine-rich repeat profile. 388 409 IPR001611 GO:0005515
Mtr3g2422 510 ProSiteProfiles Leucine-rich repeat profile. 247 268 IPR001611 GO:0005515
Mtr3g2422 510 Pfam Leucine rich repeat 316 372 IPR001611 GO:0005515
Mtr3g2422 510 Pfam Leucine rich repeat 380 422 IPR001611 GO:0005515
Mtr3g2422 510 Pfam Leucine rich repeat 247 304 IPR001611 GO:0005515
Mtr3g2422 510 SMART LRR_bac_2 222 241 - -
Mtr3g2422 510 SMART LRR_bac_2 245 264 - -
Mtr3g2422 510 SMART LRR_bac_2 386 405 - -
Mtr3g2422 510 SMART LRR_bac_2 361 382 - -
Mtr3g2422 510 SMART LRR_bac_2 338 357 - -
Mtr3g2422 510 SMART LRR_bac_2 268 287 - -
Mtr3g2422 510 SMART LRR_bac_2 315 334 - -
Mtr3g2422 510 SMART LRR_bac_2 291 310 - -
Mtr3g2422 510 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 491 - -
Mtr3g2422 510 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 491 - -
Mtr3g2422 510 SUPERFAMILY L domain-like 204 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2422 Mtr-Chr3 38054126 38058376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2422 215 425 Receptor kinase-like Gene Family AT4G26540 32.090 4.13e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2422 - - gmx:100803823 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2422 3 38054126 38058376 Mtr3g2422 3 38054126 38058376 ECH
Mtr4g3770 4 51472889 51477184 Mtr3g2422 3 38054126 38058376 PCT