Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3701 ATGAACAATAGCAATAATCCACCCAAGAATCCACCACCGGCGCCACCGTCGTTTTCATCGATTCCTGTAAACCCACAACCAATTCATCTTCTCACTCAATCTCACCCTCAAATGCAAAATCCTTCTCAATTCCCCGGTCATTTTCAGCTTTCTCAACCCCAACCCCAACCCCATGTAATTTCACAACAACAATCACAATTTGTAAACCCTCGTTCTCATCCTCAAACCCTACAACAGCACCATCAGCAACATCAACAGCAGCAGCAGCAGCAAAATGTGGCTTCTCCTGCAACTGCAAGTACTACTTCATCTGTGAAGCGTTCACATCACAAAGCAAATTCACGTCCACAAGGCTCACCTAGTGGTAACCAGACATCTGCATTCAAGACTATGGAGTTAACACCTGCTCCTTTGAGAAAAAAGAGGACTTTACCGGAGAATTTAATACCGGAAAAGGTGGCTAAGATTGTGCCCGAGTCTGCGATTTATACAAGGTTAATTGAGCTTGAGGCGCAGATAGATGCTGCTTTGAATAGGAAAAAGGTTGATGTGCAGGAGGCTGTTAAAAATCCAACTTCGGTTAGGAAGACGCTTAGGGTTTATGTGTATAATACGTTTTCGAATCAGACGAAGGAATCTGGGAAGGTTGGTGGTGTTGAGCTGCCGTCTTGGTCGCTGAGGATAACTGGGAGGATATTGGAAGAAGGTGGTAAGGATCCCGTGGTGGGAGGGATTTCGAAAAGGGGAAGTATTGTATATCCGAAGTTTTCGGCTTTCTTTAAGAAGATTACGGTGTATTTGGATCAGGGGTTTTACCCGGATAAGCATGTTATTGTGTGGGATAGTGCTCGTTCGCCTGTGCAGCAAGATGGTTTTGAGGTGAAGAGGAAAGGGGACAAAGAGTTTACTGCAGTTATTAGGTTAGGAGTGAATTACTCGCCGGAGAAGTTTATGGTTTCGACACCGTTGGCTAAAGTTTTAGGGATTGAGTTTGATACCCGTCCTAGGATAATGGCTGCTCTTTGGAACTATGTGAAGTTCAGGAAGCTGCAGAGTCCAAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAAAGTGTTCGGGGAAGAAAAGATGAAATTCTCGATGGCTTCACAGAAGATATCACAGCATTTATCACAACCACAGCATATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATTCTCCTGCTGGAACTACATGTTATGATGTGCAGGTTGATGTACCTCTTTCGCTAGAGAAAGACATGTCTGCATTCTTAACAAGTATGGAGAGGCACAAAGAAATTGATGCTTTTGATGAAGTGATTAGCGCTTCGGTAAAGAAGATCCATGAGCATCTTAAGAGACGGTCTTTCCTTCTTGGCTTTAGTCAGTCTCCAGCAGAGTTTATTAATGCATTGATAGCTTCGCAGAGCAAGGATCTAAAGCTTGTTGCCGGAGATGCCAGCCATAATGCCGAAAATGAAAAACGTTCTGAATTCTACAATAAACCATGGGTTGAGGATGCTGTAATTCGCTATCTGAGCCGGAAAAGTGCCCGAACTGATGCTCCTTGA 1587 0.4392 MNNSNNPPKNPPPAPPSFSSIPVNPQPIHLLTQSHPQMQNPSQFPGHFQLSQPQPQPHVISQQQSQFVNPRSHPQTLQQHHQQHQQQQQQQNVASPATASTTSSVKRSHHKANSRPQGSPSGNQTSAFKTMELTPAPLRKKRTLPENLIPEKVAKIVPESAIYTRLIELEAQIDAALNRKKVDVQEAVKNPTSVRKTLRVYVYNTFSNQTKESGKVGGVELPSWSLRITGRILEEGGKDPVVGGISKRGSIVYPKFSAFFKKITVYLDQGFYPDKHVIVWDSARSPVQQDGFEVKRKGDKEFTAVIRLGVNYSPEKFMVSTPLAKVLGIEFDTRPRIMAALWNYVKFRKLQSPNDPSFFMCDASLQKVFGEEKMKFSMASQKISQHLSQPQHIHLEHKIKLSGNSPAGTTCYDVQVDVPLSLEKDMSAFLTSMERHKEIDAFDEVISASVKKIHEHLKRRSFLLGFSQSPAEFINALIASQSKDLKLVAGDASHNAENEKRSEFYNKPWVEDAVIRYLSRKSARTDAP* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3701 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 87 528 - -
Mtr4g3701 528 MobiDBLite consensus disorder prediction 114 131 - -
Mtr4g3701 528 MobiDBLite consensus disorder prediction 1 143 - -
Mtr4g3701 528 Gene3D SWIB/MDM2 domain 309 394 IPR036885 -
Mtr4g3701 528 MobiDBLite consensus disorder prediction 23 107 - -
Mtr4g3701 528 Pfam SWIB/MDM2 domain 316 387 IPR003121 -
Mtr4g3701 528 SMART swib_2 313 392 IPR019835 -
Mtr4g3701 528 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 87 528 - -
Mtr4g3701 528 CDD SWIB_like 319 387 - -
Mtr4g3701 528 ProSiteProfiles SWIB/MDM2 domain profile. 312 389 IPR003121 -
Mtr4g3701 528 SUPERFAMILY SWIB/MDM2 domain 307 397 IPR036885 -
Mtr4g3701 528 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3701 Mtr-Chr4 50772221 50776255 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mtr4g3701 SWIB 6.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3701 K11650 - gmx:100817271 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3701 4 50772221 50776255 Mtr3g2355 3 37380032 37383113 ECH
Mtr4g3701 4 50772221 50776255 Mtr4g3701 4 50772221 50776255 ECH