Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2355 ATGAACAACAATCAAGCAAAAAATTTTGGTGCATCTGCATCATCATCATCATTGTTTGGTCCTTTTGGAATATCACCACAGTCTCAACAACAACAATGGAACCATCTTGTCTCTAGATCACACCCTCAAACCCAATTCCATGGTCAATTTCAGTTTTCAGAACCACAATTACATCCTCAGGGTTTTGCACAAGCTCACTATGCACAGTTGCAGTCTCAGGCAGCACTTGCTTCTTTACAATCATCACAAACTCAACCTGTTACTCCATTGCATAATGCCAATACCAATACTAATGTTGTATCGACTCCGGCTACCGGTGGCTCCAAGCGAGCAGGAACTCAAAGGAACTTGTTGCGGACTCCAGGTTCGTCTGGTGCGAACCAAAATGTGCCGGATAAGACAATGGAATTGACTCCTGCTTCTCGGCGAAGGATGAGAGAGTTACCGGAGAAGCAGATGTTGGAGAAAGTGGCTACGATTCTGCCTGAGTCTGCTCTTTATACTCAATTGCTTGATTTTGAGGCTCAGATGGATGCTGCATTGGCTAAGAGAAAGCTTGGTATGCAGGAGGCTATTAGAAGTCCCCCCCATGTTCAGAAAACTCTGAGAGTTTATGTGTTTAATACGTTCTCGAAGCACACAAAAACTGACTCTGAGGAGGATAAAACTGTTGAGGAATCTTCTTGGTCTTTGAAGATAATTGGAAGGGTATTGGAAGATGGGAACGATCTTTTGTCTGGAATTTTGCAGAGATCAAGTCCTTCTGACACAAAGTTTTCTGATTTTTTCAAGAAAATTACTATATGCTTGGATCAGAACCTTTATCCTGAAAATCACATTATTGTGTGGGATAGTGCTCATTCGCCTAAACAACAGGATGGCTTTGAGGTTAAGAGAAAAGGAGACAAAGAATTCACTGCAGTTATCAAATTAGATTTGAAATATTCACCTGAGAAGTTCATGGTCTCAGCACCATTGTCTAGACTCTTAGGGGTTGAGGTCGAGACTCGCCCGAGAATAATAGCTGCTCTTTGGCATTATGTGAAGTCCAGGAAGCTACAATGTGCCGATGAACCTTCATTCTTCATCTGTGATCCTTACCTCCAAAGGGTTTTCGGGGAAGAGAAGATGGGATTCACCACGGCTGCTCAGAAGTTGTTAGAGCATTTGTCACAACCAAAGCCTATATATTTGGAGCATAACATCAAGCTTTCTGGAGACTGCCCATCTGGAACTGCATGCTACGATGTACAGGTTGACATGCCTATTCCAATGCAGAAAGAAATGTCTGCATTCTTGGCTAGCAACAGCATTGAGAGTAACAAAGAGATTGAAACTCAAGATGAGATGATTTCCGCTAACCTAAAGAAGATCCAAGAGCATCGTAGAAGACGTGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATCAATGCTACAATTGCTTCTCAGAGCAAGGGTCCAAAACTTGTTGCTGGGGATGCCGGCCGTAATTCTGAAAAGGAGCAGTGTCCTGAATTTTATAATCAACCATGGGTTGAGGATGCTGTCATTCGGTACTTGAACCGCAAAGGTGCTGGAAGAGATGCTCGTGAGGGCAACTAA 1611 0.4295 MNNNQAKNFGASASSSSLFGPFGISPQSQQQQWNHLVSRSHPQTQFHGQFQFSEPQLHPQGFAQAHYAQLQSQAALASLQSSQTQPVTPLHNANTNTNVVSTPATGGSKRAGTQRNLLRTPGSSGANQNVPDKTMELTPASRRRMRELPEKQMLEKVATILPESALYTQLLDFEAQMDAALAKRKLGMQEAIRSPPHVQKTLRVYVFNTFSKHTKTDSEEDKTVEESSWSLKIIGRVLEDGNDLLSGILQRSSPSDTKFSDFFKKITICLDQNLYPENHIIVWDSAHSPKQQDGFEVKRKGDKEFTAVIKLDLKYSPEKFMVSAPLSRLLGVEVETRPRIIAALWHYVKSRKLQCADEPSFFICDPYLQRVFGEEKMGFTTAAQKLLEHLSQPKPIYLEHNIKLSGDCPSGTACYDVQVDMPIPMQKEMSAFLASNSIESNKEIETQDEMISANLKKIQEHRRRRAFFLSFSQSPAEFINATIASQSKGPKLVAGDAGRNSEKEQCPEFYNQPWVEDAVIRYLNRKGAGRDAREGN* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2355 536 SUPERFAMILY SWIB/MDM2 domain 313 400 IPR036885 -
Mtr3g2355 536 CDD SWIB_like 322 390 - -
Mtr3g2355 536 MobiDBLite consensus disorder prediction 83 133 - -
Mtr3g2355 536 Gene3D SWIB/MDM2 domain 313 397 IPR036885 -
Mtr3g2355 536 ProSiteProfiles SWIB/MDM2 domain profile. 315 392 IPR003121 -
Mtr3g2355 536 SMART swib_2 316 395 IPR019835 -
Mtr3g2355 536 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 83 534 - -
Mtr3g2355 536 Pfam SWIB/MDM2 domain 319 390 IPR003121 -
Mtr3g2355 536 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 83 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2355 Mtr-Chr3 37380032 37383113 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mtr3g2355 SWIB 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2355 K11650 - gmx:100802455 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3701 4 50772221 50776255 Mtr3g2355 3 37380032 37383113 ECH
Mtr3g2355 3 37380032 37383113 Mtr3g2355 3 37380032 37383113 ECH