Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2016 ATGAACAAGCCTCCACGAGAAAATCATGAACGTAACAACAACAACAACAACACTGTTACTACTCTTGATTCCAGATTCAGCCAGACCCTACGAAACGTTCAAGGGTTGCTCAAAGGTCGTAGCATGCCCGGTAAAGTATTGATGAGCAGAAGGTCAGAACCTTCTGATAACTTGAATTCAAAGGTATCCTCAACATTCTACAAAAGGAGTTTCTCACACAATGATGCTGGCACAAGTGATCAGATATCTGGTGCAGTAGAGGAGGAGGTTCAGAGTACAAGTAAATCAGTTAGTGCTGCTAATGTTAGTAAGTTAAAAAGCTCAACCTCTCTTGGGGAAAACTTATCTGAAGACATCCGCAAGTATACCATCGGAGCTAGAGCTACGGATTCGGCAAGAGTTACAAAGTTCAATAAGGTGCTTTCTGGAACAGTGGTTATATTAGACAATTTGCGTGAATTAGCTTGGAGCGGTGTTCCAGATTATATGCGCCCTAAAGTGTGGAGACTCCTCTTGGGATATGAACCACCTAATTCAGATAGAAAGGAGGGAGTTCTAGGAAGGAAGCGCGGAGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATTCTGAACGTTCAGACGATGAGGTCAACATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCTGACGTTACATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGACATCCTGCAAGTGGATATGTCCAGGGGATAAATGATCTCGTTACACCGTTTTTAGTTGTTTTTATATCAGAACACTTAGAAGGGGGTATAGATGATTGGTCAATGTCCGATTTATCTTCAGACAAAATCTCTAATGTAGAGGCTGACTGCTACTGGTGTTTGTCAAAGTTGCTTGACGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAATTGAAGGAATTGGTCAGGAGGATAGATGAGCCTATTTCACAACATATAGAGGATCAGGGACTTGAATTTCTTCAATTTGCTTTCCGGTGGTTCAACTGTCTTTTGATCCGCGAGATACCATTCGATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGACGCCTTGCCAGACTTCCTTGTATATATATTTGCCAGTTTCCTTCTAACGTGGTCAGACAAACTCCAGAGGTTGGAATTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAGAACTGGACTCACCAGGACCTCGAGATGGTGCTTTCCCGGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCAAGCCATTTCGCTAGCTGA 1368 0.4291 MNKPPRENHERNNNNNNTVTTLDSRFSQTLRNVQGLLKGRSMPGKVLMSRRSEPSDNLNSKVSSTFYKRSFSHNDAGTSDQISGAVEEEVQSTSKSVSAANVSKLKSSTSLGENLSEDIRKYTIGARATDSARVTKFNKVLSGTVVILDNLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLGRKRGEYLDCISQYYDIPDSERSDDEVNMLRQIAVDCPRTVPDVTFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEHLEGGIDDWSMSDLSSDKISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPISQHIEDQGLEFLQFAFRWFNCLLIREIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQRLEFQELVMFLQHLPTQNWTHQDLEMVLSRAFMWHSMFNNSPSHFAS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2016 455 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 321 443 IPR035969 -
Mtr4g2016 455 SMART tbc_4 155 411 IPR000195 -
Mtr4g2016 455 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g2016 455 PANTHER GTPASE-ACTIVATING PROTEIN GYP1-LIKE 6 452 - -
Mtr4g2016 455 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 137 345 IPR035969 -
Mtr4g2016 455 Gene3D - 131 184 - -
Mtr4g2016 455 Pfam Rab-GTPase-TBC domain 162 406 IPR000195 -
Mtr4g2016 455 Gene3D - 320 455 - -
Mtr4g2016 455 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 6 452 - -
Mtr4g2016 455 MobiDBLite consensus disorder prediction 39 61 - -
Mtr4g2016 455 ProSiteProfiles TBC/rab GAP domain profile. 158 385 IPR000195 -
Mtr4g2016 455 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 195 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2016 Mtr-Chr4 33700668 33706317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2016 K20360 - gmx:100819281 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3455 2 48713497 48719185 Mtr4g2016 4 33700668 33706317 PCT