Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1997 ATGGATCCAAATGAGCTAAAGCGTGTATTCCAAATGTTCGATAGGAATGGGGACGGTAGAATAACAAAGAAAGAATTAACGGATTCTTTGGAGAATTTAGGAATCTTCATACCTGACAAGGAGTTAACACAAATGATCGAGAAGATTGATGTCAATGGAGACGGTTGCGTGGATTTAGACGAGTTTGGTGAGTTATATCAATCCATCATGGACGAAAAAGATGAAGAGGAAGACATGAGGGAAGCTTTCAATGTCTTTGATCAAAATGGTGACGGTTTTATAACCGTCGAGGAACTGAGAGTGGTTTTGTCATCTCTTGGTCTTAAACAAGGAAGAACCGTTGAGGAATGTAAGAGGATGATTATGAAGGTGGATGTTGATGGTGATGGTATGGTTAATTATAAGGAGTTTAAGCAAATGATGAAAGGAGGAGGTTTCAGTGCTCTTGGTTAA 453 0.3907 MDPNELKRVFQMFDRNGDGRITKKELTDSLENLGIFIPDKELTQMIEKIDVNGDGCVDLDEFGELYQSIMDEKDEEEDMREAFNVFDQNGDGFITVEELRVVLSSLGLKQGRTVEECKRMIMKVDVDGDGMVNYKEFKQMMKGGGFSALG* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1997 150 SMART efh_1 78 106 IPR002048 GO:0005509
Mtr4g1997 150 SMART efh_1 41 69 IPR002048 GO:0005509
Mtr4g1997 150 SMART efh_1 5 33 IPR002048 GO:0005509
Mtr4g1997 150 SMART efh_1 116 144 IPR002048 GO:0005509
Mtr4g1997 150 Gene3D - 2 68 - -
Mtr4g1997 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Mtr4g1997 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Mtr4g1997 150 CDD EFh 78 142 IPR002048 GO:0005509
Mtr4g1997 150 PRINTS Parvalbumin signature 65 83 - -
Mtr4g1997 150 PRINTS Parvalbumin signature 87 103 - -
Mtr4g1997 150 PRINTS Parvalbumin signature 124 137 - -
Mtr4g1997 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 149 - -
Mtr4g1997 150 Gene3D - 69 144 - -
Mtr4g1997 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Mtr4g1997 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Mtr4g1997 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Mtr4g1997 150 SUPERFAMILY EF-hand 4 144 IPR011992 -
Mtr4g1997 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Mtr4g1997 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Mtr4g1997 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Mtr4g1997 150 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 149 - -
Mtr4g1997 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Mtr4g1997 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1997 Mtr-Chr4 33536413 33537443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1997 1 148 EF-hand Containing Proteins AT2G43290 75.163 4.46e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1997 K13448 - zju:107422102 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3433 2 48446517 48447875 Mtr4g1997 4 33536413 33537443 PCT