Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1985 ATGCTTCCATACAAATACATCTCCAAAACAAAAATGTTGGTCGTTCCCTCTTCTTCTCATTGCTTTGTTTCGGGGAGCTGGAGAATCAAAGCTACGATCATGTCTGATACTACAACAACATTCGCTTCCATCAAACCCTCCGACTCCGACCCCACATCTGGCGCTTCAGCTTCCCAACCAGTTCATGTCTACGTCCGAAGAAACAAAAAAGCCAAAGGAATCACCACCACCACCACCACCAACATGACAAAACTTCAACAAAATCAACATCTTCCTTCAACACAGACTCATAAAAAGTTTGGTTTGCCTGAAATTGAAGACTTTGCATATAAAGGATCAAATGAATTGACTCAGTGCTTTAAATCACCTGCACACTGGGAAGAGACACTTGAGGGTATTCGCAAAATGAGGTGTTCTGGAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTTCTACACTACCTCCTAAGGAAAGGCGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACCAAGGATCATATCAATCATGGGGCAATCCAACGTCTTCTTCAAAACGATCTGCTTACTCCTGATGCAATCAACAATGCTGATGAAGAAACCATAAAAAAGTTGATTTACCCAGTTGGATTTTATACGAGAAAAGCCACTAACTTGAAAAAAATTGCACATATTTGTCTCATGAAGTATGGTGGAGACATACCTAGCAAAATCGAGCAACTACTACAACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGCATGGAACGATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGGCTAGGCTGGGTGTCAAAATTGGGCACGAAACAGAAAACTTTGACACCTGAAGAGACAAGAGTGTCACTGCAACTGTGGCTTCCAAGGGAAGAATGGGATCCAATTAATCCTCTATTGGTTGGATTTGGACAGACAATTTGTACACCACTAAGACCTCGCTGTGGAGAATGTAGTATAAGTCACTTGTGTCCATCCGCGTTCAAGGAGGCCGCAGGTTCAAGTCCAGTTTCCAAATCCACCAAGTCTGGAAGGAACAAAAAGCGCTAA 1113 0.4286 MLPYKYISKTKMLVVPSSSHCFVSGSWRIKATIMSDTTTTFASIKPSDSDPTSGASASQPVHVYVRRNKKAKGITTTTTTNMTKLQQNQHLPSTQTHKKFGLPEIEDFAYKGSNELTQCFKSPAHWEETLEGIRKMRCSGDAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHINHGAIQRLLQNDLLTPDAINNADEETIKKLIYPVGFYTRKATNLKKIAHICLMKYGGDIPSKIEQLLQLPGIGPKMAHLVMNVAWNDVQGICVDTHVHRICNRLGWVSKLGTKQKTLTPEETRVSLQLWLPREEWDPINPLLVGFGQTICTPLRPRCGECSISHLCPSAFKEAAGSSPVSKSTKSGRNKKR* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1985 370 SUPERFAMILY DNA-glycosylase 136 358 IPR011257 GO:0003824|GO:0006281
Mtr4g1985 370 Pfam Helix-hairpin-helix motif 233 261 IPR000445 GO:0003677
Mtr4g1985 370 SMART endo3end 171 327 IPR003265 GO:0006284
Mtr4g1985 370 Hamap Endonuclease III-like protein 1 [NTHL1]. 122 351 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Mtr4g1985 370 CDD ENDO3c 163 325 IPR003265 GO:0006284
Mtr4g1985 370 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 86 368 - -
Mtr4g1985 370 SMART ccc3 328 348 IPR003651 GO:0051539
Mtr4g1985 370 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 329 345 IPR004035 -
Mtr4g1985 370 Gene3D - 268 345 IPR023170 -
Mtr4g1985 370 Pfam HhH-GPD superfamily base excision DNA repair protein 167 295 IPR003265 GO:0006284
Mtr4g1985 370 ProSitePatterns Endonuclease III family signature. 236 265 IPR004036 -
Mtr4g1985 370 Gene3D Hypothetical protein; domain 2 158 267 - -
Mtr4g1985 370 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 86 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1985 Mtr-Chr4 33402863 33408080 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1985 K10773 - gmx:100818398 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3425 2 48339636 48343218 Mtr4g1985 4 33402863 33408080 PCT