Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3425 ATGTTTGTGTTTCCTTTTACTTATGTTTCTGTTTGTTTGGTGCGAATCTCTGTCTTCTCTTCCATTACAAGAGCAACATGCTTCTCCTCCAAAACCAATCCACACCAAGTGTTCCAATTTAACACACGCAAAAACACTACACAACTTCAACCAAAGAAGCACTTGCTGCAAATTCAAGACCAAAAATTTGGTTTGACTGAGATTGAAGGATCTGCATACACAGGAACAAATGGATTGGGTCAAACTAATGAGAGTCCTGCCAATTGGGAAAACGTGCTTGAAGGGATTCGCAAAATGATGTATTCGATAGACACTACCGGTGATCGGGAAGATGCTGATATTCATCCTCCTAAGGACAGAAGATTTGCTGTCCTGGCATCTTCTCTTTTATCAAGCCAGACTAAGGAGCATGTTACTCGCGGAGCAACTCAACGTCTTCGTCAAAATGGTCTTCTTACTGCTGATGCACTCAACAAAGCTGATGAAGAAACTATCAAAAAACAGATTTACCCTGTTGGGTTTTATATAAGAAAAGCTGGTAACTTGAAGAAAATTGCTGATATTTGTCTCACTAAGTATGATGGAGACATACCTAACTCAATTGAGGAACTACTCTCACTTCCAGGCGTAGGTCCGAAGATTGCTCATTTGGTTATGATTATTGCATGGAACAATGTCCAAGGGATATGCGTAGATACTCATGTCCACCGCATCAGCAATCGTCTTGGATGGGTTTCGAGACCCGGCACAAAACAGAGAACTTCAATACCCGAAGAAACAAGAAAGGCGCTGGAACGGTGGCTTCCGAGGGAAGAATGGGTTGCAATAAATCTTCTTTTGGTAGGATTTGGAAGGACAATTTGTACTCCTTTACGGCCTCGCTGTGGAGAGTGTGGTGTAAGTAGGTTCTGCCCGTCGGCGTTCAAGGAGACTTCAAGTTCATCTTCGAGGTCCAATAAATCTCAATTGAATAAGAAGCCTGAATCAAGCTGA 993 0.423 MFVFPFTYVSVCLVRISVFSSITRATCFSSKTNPHQVFQFNTRKNTTQLQPKKHLLQIQDQKFGLTEIEGSAYTGTNGLGQTNESPANWENVLEGIRKMMYSIDTTGDREDADIHPPKDRRFAVLASSLLSSQTKEHVTRGATQRLRQNGLLTADALNKADEETIKKQIYPVGFYIRKAGNLKKIADICLTKYDGDIPNSIEELLSLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRISNRLGWVSRPGTKQRTSIPEETRKALERWLPREEWVAINLLLVGFGRTICTPLRPRCGECGVSRFCPSAFKETSSSSSRSNKSQLNKKPESS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3425 330 Hamap Endonuclease III-like protein 1 [NTHL1]. 85 310 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Mtr2g3425 330 Gene3D Hypothetical protein; domain 2 108 220 - -
Mtr2g3425 330 Pfam HhH-GPD superfamily base excision DNA repair protein 127 252 IPR003265 GO:0006284
Mtr2g3425 330 SUPERFAMILY DNA-glycosylase 116 311 IPR011257 GO:0003824|GO:0006281
Mtr2g3425 330 ProSitePatterns Endonuclease III family signature. 195 224 IPR004036 -
Mtr2g3425 330 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 64 325 - -
Mtr2g3425 330 SMART ccc3 287 307 IPR003651 GO:0051539
Mtr2g3425 330 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 288 304 IPR004035 -
Mtr2g3425 330 SMART endo3end 130 286 IPR003265 GO:0006284
Mtr2g3425 330 Gene3D - 221 310 IPR023170 -
Mtr2g3425 330 CDD ENDO3c 122 284 IPR003265 GO:0006284
Mtr2g3425 330 Pfam Helix-hairpin-helix motif 192 219 IPR000445 GO:0003677
Mtr2g3425 330 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 64 325 - -
Mtr2g3425 330 MobiDBLite consensus disorder prediction 307 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3425 Mtr-Chr2 48339636 48343218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3425 K10773 - gmx:100805799 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3425 2 48339636 48343218 Mtr2g3425 2 48339636 48343218 ECH
Mtr2g3425 2 48339636 48343218 Mtr4g1985 4 33402863 33408080 PCT