Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1905 ATGTTGTCTGAGTTGGGAAGAAGACCTGTTATTGGCAATAACGAGGGTTGTTTTGGTGATGAATTGGAGAAGGAAATAGGGATGTTGCTCCGAGAGCAACGGAGGCAAGAAGGCGATGATCGCGAAAGGGAGTTGAATATATTTAGGAGTGGATCAGCTCCTCCTACTGTGGAGGGTTCTTTGAATGCTGTTGGAGGGTTGTTTGGTGCTGGTGGTGTTGCTGGTGGTTTTTCAGATTTTCCGGGGAATAAAGATGTGAATGGTGTTGTTTCTGAGGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATACTATTATTCAAATGTGAATTTGAATCCTAGGCTTCCACCTCCTTTGTTGTCAAAGGAAGATTGGAGGTTTCAACAAAGGCTTAAAGGTGGGGCCTCAGCTGTAGGTGGAATTGGAGATAGGAGGAAAGGTAACATGACTGATGATAGTGGTGGTAGGTCAATGTTTTCGACGCCACCCGGTTTTAACTTTAGGAAGCAAGAAAGGAGTGAGGTGGAGAATGAAAAGACTAGAGGTTCTGCTGAATGGGGTGGTGATGGTTTGATTGGTTTGCCTAGCTTGGGACTTAGAAGCAAACAAAAGAGCCTTGCTGAAATTTTTCAGGATGATATGGAGCGTAACACCCCCGTCACAGGCCTTCCTTCTCGTCCAGCAAGTCGCAATGCATTCGATGAAAATGTTGATAAAGTAAATACTTCTGAAGCAGAGTTAGCTCATGTTCAAGGATCATCTGCAACACAAAATATTGGTCTGCCAGCTTCGTATTCTTATGCTGCTGCACTAGGAGGATCTTCATTGTCAAGAAGCACTACTCCTGATCCACAACATATTGCAAGGGCTCCTAGTCCATGTCTCACACCTATTGGCGGAGGGAGAAATGTTGCTTCTGACAAGAGAGGCATTGTCAGTCCAGATTCATTTAATGGCGTTTCATCTGGCATGAACGAGTCAGCAGATCTTGTGGCTGCTTTATCTGGGATGAACTTGTCTGCAGACGATGAAGACCATTTGCCATCACAGGTTGAGTCAGATGTCGATAATCATCAGAGATATCTTTTTGGCATGCAGGGCGGTCAAGATCACGGCAAGCAACATCCATATCTAAAAAAATCTGAATCAGGGCATTTGCAAAGTTCAGGTAAGAGCAGGTCAGAACTTAATAATCTGTCCCTGCACAGGCAGGCTGAGCTACAAAACTCGACTGCTCCTTTGAATAACTCATATTTCAAAGGATCACCTACCTCCCATTTTAGTGGAGGAGGTAATATGCAAGCTCAGTATCAGTCTATAGATGGTATGAATTCATCATTCACTAATTATGGCTTAAGTGGTTATGGTGGAAATCCAGCAGCATTGACATCCTTGATGACTAACCAATATGGCACCAGTAATCTGCCACCGATGTTTGAAAACGTTGCTGCTGCATCCATGATGGCTTCCCCTGGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCGGGAGCTGGTTCTCCTTCTGATCTGCATAATCTTGGTCGGATGGGAAATCAAATTGCTGGTGGTGCTCTTCAGGCTCCGTTTGTTGATCCGATGTATCTTCAGTATATGAGGACGTCAGAGTATGCTGCGGCACAACTCGCTGCTCTCAACGACCCCTCTGTGGACAGGAACTACTTGGGTAATTCGTACATGAATTTACTTGAGCTGCAGAAAGCCTACCTCGGGTCTGTTCTCTCGCCTCAAAAGTCACAGTACAATGCACAGCTTGGTGGTAAATCAGGCAACTCCAATCACCATGGTTACTATGGAAATCCGGCATATGGTGTTGGGTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGGTTCTCCAGTTGGATCCGGAAGTCCAATTAGGCACAATGATCTGAACAACATGCGTTTTGCTTCTGGAATGAGGAACTTAGCCGGGGTCATGGGACCTTGGCATGTAGATTCCGGGAATATGGATGAAAGCTTTGCTTCTTCTCTGCTGGAAGAGTTTAAAAGCAATAAAGCCAAGTGTTTTGAGCTCTCTGAAATTGCCGGACATGTTGTTGAATTCAGTGCCGATCAATATGGAAGCCGATTTATTCAACAAAAGCTTGAAACAGCAACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCTCTTGCTTTGATGACCGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCACCCCAGAGAAGAGAATTAGCAAACAAGCTTATTGGCCACGTTCTTACACTTAGCCTTCAGATGTATGGTTGCCGGGTTATTCAGAAGGCCATTGAAGTTGTTGATCTGGATCAAAAAATAGAGATGGTTAAAGAGCTTGATGGTAATATCATGCGCTGTGTTCGTGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAATGTGTCCCTGAAGAGGCGATCGACTTTATTGTTTCAACATTTTTCGATCAAGTTGTGACACTCTCAACCCATCCATACGGTTGTCGTGTGATACAGAGAGTACTGGAGCACTGCGAAAGCCCTGCAACACAGCAGAAAGTTATGGATGAGATTTTAGGCGCTGTTAGCATGCTAGCACAGGATCAGTATGGCAATTACGTTGTTCAGCATGTACTGGAACATGGGAAGCCTCACGAGCGTTCTACCATAATAAAGGAGTTAGCAGGGAAGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAGTGTCTGACCTTTAGTGGTCCTGCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACGGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCATCAACGTGAATTGATTCTTTCACGAATCAAGGTTCATTTGAATGCTTTGAAAAAGTATACCTATGGAAAGCACATCGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGAAGAATGGCTGCTCAGACTCCTCAACTTGCTTAG 3078 0.4402 MLSELGRRPVIGNNEGCFGDELEKEIGMLLREQRRQEGDDRERELNIFRSGSAPPTVEGSLNAVGGLFGAGGVAGGFSDFPGNKDVNGVVSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASAVGGIGDRRKGNMTDDSGGRSMFSTPPGFNFRKQERSEVENEKTRGSAEWGGDGLIGLPSLGLRSKQKSLAEIFQDDMERNTPVTGLPSRPASRNAFDENVDKVNTSEAELAHVQGSSATQNIGLPASYSYAAALGGSSLSRSTTPDPQHIARAPSPCLTPIGGGRNVASDKRGIVSPDSFNGVSSGMNESADLVAALSGMNLSADDEDHLPSQVESDVDNHQRYLFGMQGGQDHGKQHPYLKKSESGHLQSSGKSRSELNNLSLHRQAELQNSTAPLNNSYFKGSPTSHFSGGGNMQAQYQSIDGMNSSFTNYGLSGYGGNPAALTSLMTNQYGTSNLPPMFENVAAASMMASPGMDSRILGGGLASGAGSPSDLHNLGRMGNQIAGGALQAPFVDPMYLQYMRTSEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNAQLGGKSGNSNHHGYYGNPAYGVGLSYPGSPMANSGSPVGSGSPIRHNDLNNMRFASGMRNLAGVMGPWHVDSGNMDESFASSLLEEFKSNKAKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAPQRRELANKLIGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVKELDGNIMRCVRDQNGNHVIQKCIECVPEEAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCESPATQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFSGPAERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMAAQTPQLA* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1905 1025 MobiDBLite consensus disorder prediction 135 187 - -
Mtr4g1905 1025 MobiDBLite consensus disorder prediction 169 183 - -
Mtr4g1905 1025 MobiDBLite consensus disorder prediction 153 167 - -
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 798 833 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Nucleic acid binding protein NABP 289 689 IPR012940 -
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 834 870 IPR001313 GO:0003723
Mtr4g1905 1025 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1018 - -
Mtr4g1905 1025 SMART pum_5 907 942 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 762 797 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 690 725 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 949 984 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 871 906 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 726 761 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 798 833 IPR001313 GO:0003723
Mtr4g1905 1025 SMART pum_5 834 870 IPR001313 GO:0003723
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 871 906 IPR001313 GO:0003723
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 762 797 IPR001313 GO:0003723
Mtr4g1905 1025 CDD Pumilio 686 1006 IPR033712 GO:0003723
Mtr4g1905 1025 MobiDBLite consensus disorder prediction 276 295 - -
Mtr4g1905 1025 SUPERFAMILY ARM repeat 673 1007 IPR016024 -
Mtr4g1905 1025 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 670 1010 IPR033133 GO:0003723
Mtr4g1905 1025 MobiDBLite consensus disorder prediction 363 394 - -
Mtr4g1905 1025 Gene3D - 670 1016 IPR011989 -
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 943 984 IPR001313 GO:0003723
Mtr4g1905 1025 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1018 - -
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 726 761 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 877 908 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 838 873 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 730 764 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 694 728 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 809 832 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 912 945 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 766 799 IPR001313 GO:0003723
Mtr4g1905 1025 Pfam Pumilio-family RNA binding repeat 957 986 IPR001313 GO:0003723
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 907 942 IPR001313 GO:0003723
Mtr4g1905 1025 ProSiteProfiles Pumilio RNA-binding repeat profile. 690 725 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1905 Mtr-Chr4 32272804 32279127 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1905 K17943 - gmx:100803806 1678.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1905 4 32272804 32279127 Mtr4g1905 4 32272804 32279127 ECH
Mtr2g3376 2 47825296 47831400 Mtr4g1905 4 32272804 32279127 ECH