Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3376 ATGTTGTCTGATATGGGTAGGAGGCCAGTGATTGGTGGTGGTAATGAGGGTTCGTTTGGAGATGAATTTGAAAAGGAAATAGGGATGTTGCTTCGCGATCAACGGCGTCATGAGGTTGATGATCATGAACCTGAACTTAATATGTATAGGAGTGGATCAGCTCCTCCAACTGTGGAGGGTTCGTTGAGTGCAGTTGGAGGGTTGTTTGGAGGTGGTTCTACTGCTGCTGCTGCAGTTTCAGAGTTTTCTGGGAATGGTTTTGGTTCTGAAGAAGAGCTTAGGTCTGATCCAGCTTATCTTCAATATTATTACTCTAATGTGAATTTGAATCCCAGACTTCCTCCTCCTTTGCTATCAAAGGAGGATTGGAGGTTTTCGCAGAGACTAAAAGGTGGAGCTTCTGCAATTGGTGGAATTGGAGATAGGAGGAAGGTTAATGGAGCTGATGAGAATGGTGGAAGAGCGGTGTTTGCTACACCTCCGGGTTTTAACAATAGGAAAAGAGAGACTGAGGTTGTGGCTGATGAGAAAATTAGAGGTTCTGCTGAGTGGGGTGGCGATGGACTCATTGGTTTGCCAGGACTAGGTCTTGGGACTAAACAAAAGAGCCTTGCAGAAATTTTTCAGGATGACATGGGACATAACACCTCTGTCACGGGCTTTCCGTCTCGTCCAGCCAGTCGCAACACATTTGATGAAAATGTTGAGATTACATCCTCTGCAGAAGCAGAGCTGGCTCATTTGCGCCATGATTCCTCAGCCACTGATGGTTTGAGATTTGGATCAAATGTTCAGGGGTCACCTGCATCCCAAAATGCTGGTCCACAGGTTTCATATTCTTATGCTGCTGCACTTGGTGGTTCTTCCCTATCACGAAGCACTACTCCTGATCCACAACACGTTGCTAGGGCTCCCAGTCCTTGCCCCACACCTATTGGTAGTGGGAGAGTTGTTGCTGCTGAGAAGAGAGGTATTACCAGTCCTGATGTCTCTGGCATCAATGGGTCTGCAGATATTGCATCTGCATTGTCTGGCATGAATTTGTCAACAGATGACGCGCTAGAAGGTGATAACCATTTCCCATCACAAGTTGAGTCCGATGTTAATAATTATCAAAGATATCTTTTTGGTATGCAAGGTGGTCAGGATCATGGCAAGCAGCACGCATATTTAAAGAAGGCTGAATCAGGACACATGCCGAAAACAGCTCACTCTGATTCAGGTAAGAGAAGTGGAAGCGGGTCAGACATGAGAAGTCCATCCTTGGATAGGCAGGTTGAGCATCAAAAGTCTGCCGTTTCTCCCAACAACTTGTATTTCAATGGATCACCTGGCTCCCCTTATAGTGGTGGAGGTGGTTTGCCTGCACAATACCAGCCTTCAGATGGTTCTAATTCACCATTTAATAACTATGGCCTGAGTGGTGGGTATGCTGGAAATCCTGCTGTGGCATCCTTCATGGCTAACCAACTTGGAACTGGTAATATGCCACCCCTGTTTGAAAACGTTGCTGCAGCATCAGCTATGGTGTCCCCTGGAATGGACTCAAGAATTCTTGGAGGTGGTTTGCCCTCTGGAGTTGCTTCTCCATCTGATGTGCATGTTCTCAGTAGAATGGGAAATCAAATTGCAGGCGGTGCTCTTCAGTCTCCTTATGTTGATCCGATGTATCTTCAGTACATGAGGACACCCGAGTATGCTGCTGCACAACTTGCTGCTCTTAACGACCCATCTGTAGACAGGAATTACTTGGGCAACTCATATATGAATTTACTTGAGCTTCAAAAAGCTTATCTTGGATCTCTGCTTTCACCTCAGAAGTCACAATACAATGTTCCATTGGGTGGTAAATCCGGTGGTTCCAACCATCATGGATATTATGGAAATCCTACATATGGTGTTGGTTTGTCTTATCCAGGAAGTCCAATGGCAAACTCTTTATCCACTTCTCCAGTTGGATCTGGCAGTCCTATTAGGCACAATGACCTGAATATGCATTTTGCTTCTGGAATGAGGAATGTAGCTGGGGTCATGGCACCATGGCACCTAGATGCTGTAAACGTAGATGAAAACTTTGCTTCGTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACAAAGTGCTTTGAGCTTTCTGAAATTTCTGGTCATGTTGTTGAATTCAGTGCTGATCAATATGGTAGCCGGTTTATTCAACAAAAGCTTGAAACAGCAACCACTGAAGAAAAGAATATGGTTTATCAGGAAATCACGCCACATGCTCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAGAAGTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTGGCCAACAAGCTTTATGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTCATCCAGAAGGCCATAGAAGTTGTTGATCTGGACCAGAAGATTAAAATGGTTCAAGAGCTTGATGGTAATATCATGCGCTGTGTACGAGATCAGAATGGTAACCATGTCATTCAGAAGTGTATTGAATGCGTACCTGAAGATGCAATTGATTTTATTATCTCAACTTTTTTTGATCAAGTTGTGACACTATCTACCCATCCATATGGTTGCCGGGTGATACAGAGAGTATTGGAGCACTGTGAAAATCCTGACACACAACAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTATGGCAACTATGTTGTCCAGCATGTGCTTGAGCATGGGAAACCTCATGAGCGCTCTACAATCATCAAGGAATTAGCAGGCAATATAGTTCAAATGAGCCAGCAGAAGTTTGCCTCTAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTTCTGAACGCCTATTGCTTGTAAATGAGATGCTTGGAACTACGGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAGTTTGCTAATTATGTTGTACAAAAGGTGCTGGAGACTTGTGATGACCAACAACGTGAGCTAATTCTTTCTCGAATTAAAGTTCATTTGAATGCATTGAAAAAGTACACCTATGGGAAACACATTGTCGCTCGTGTAGAGAAACTTGTTGCTGCCGGAGAGAGGAGAATTGCTGCTCAGTCTCCTCATACTACTTAG 3144 0.4402 MLSDMGRRPVIGGGNEGSFGDEFEKEIGMLLRDQRRHEVDDHEPELNMYRSGSAPPTVEGSLSAVGGLFGGGSTAAAAVSEFSGNGFGSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFSQRLKGGASAIGGIGDRRKVNGADENGGRAVFATPPGFNNRKRETEVVADEKIRGSAEWGGDGLIGLPGLGLGTKQKSLAEIFQDDMGHNTSVTGFPSRPASRNTFDENVEITSSAEAELAHLRHDSSATDGLRFGSNVQGSPASQNAGPQVSYSYAAALGGSSLSRSTTPDPQHVARAPSPCPTPIGSGRVVAAEKRGITSPDVSGINGSADIASALSGMNLSTDDALEGDNHFPSQVESDVNNYQRYLFGMQGGQDHGKQHAYLKKAESGHMPKTAHSDSGKRSGSGSDMRSPSLDRQVEHQKSAVSPNNLYFNGSPGSPYSGGGGLPAQYQPSDGSNSPFNNYGLSGGYAGNPAVASFMANQLGTGNMPPLFENVAAASAMVSPGMDSRILGGGLPSGVASPSDVHVLSRMGNQIAGGALQSPYVDPMYLQYMRTPEYAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSLLSPQKSQYNVPLGGKSGGSNHHGYYGNPTYGVGLSYPGSPMANSLSTSPVGSGSPIRHNDLNMHFASGMRNVAGVMAPWHLDAVNVDENFASSLLEEFKSNKTKCFELSEISGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEITPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCENPDTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGNIVQMSQQKFASNVVEKCLTFGGPSERLLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPHTT* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3376 1047 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 692 1032 IPR033133 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 406 444 - -
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 856 892 IPR001313 GO:0003723
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 893 928 IPR001313 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 254 275 - -
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 712 747 IPR001313 GO:0003723
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 784 819 IPR001313 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 289 312 - -
Mtr2g3376 1047 PANTHER PUMILIO HOMOLOG 1-RELATED 37 1040 - -
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 965 1006 IPR001313 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 394 467 - -
Mtr2g3376 1047 Gene3D - 692 1038 IPR011989 -
Mtr2g3376 1047 SUPERFAMILY ARM repeat 695 1029 IPR016024 -
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 748 783 IPR001313 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 256 275 - -
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 979 1008 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 831 854 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 788 821 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 860 895 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 933 967 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 752 783 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 716 750 IPR001313 GO:0003723
Mtr2g3376 1047 Pfam Pumilio-family RNA binding repeat 899 930 IPR001313 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 1 22 - -
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 929 964 IPR001313 GO:0003723
Mtr2g3376 1047 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 37 1040 - -
Mtr2g3376 1047 CDD Pumilio 708 1028 IPR033712 GO:0003723
Mtr2g3376 1047 SMART pum_5 820 855 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 748 783 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 784 819 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 893 928 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 712 747 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 856 892 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 971 1006 IPR001313 GO:0003723
Mtr2g3376 1047 SMART pum_5 929 964 IPR001313 GO:0003723
Mtr2g3376 1047 MobiDBLite consensus disorder prediction 140 163 - -
Mtr2g3376 1047 Pfam Nucleic acid binding protein NABP 303 711 IPR012940 -
Mtr2g3376 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 820 855 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3376 Mtr-Chr2 47825296 47831400 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3376 K17943 - gmx:100818836 1714.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3376 2 47825296 47831400 Mtr2g3376 2 47825296 47831400 ECH
Mtr2g3376 2 47825296 47831400 Mtr4g1905 4 32272804 32279127 ECH