Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1818 ATGGAGTTCCTCTCTTTACTTTATGGGGTTCTAGCATTGTACATATGTTTCCTAATTTGGAAACTATTAGATCAAAAGAGGGACCAAGAGTGTTACATATTAGATTACCAATGTTACAAGCCAACACAAGATAGAATGCTAGGGACTGAGTTTTGTGGCAAATTAATCAGAAGAACAGAAAATTTGGGTCTAAATGAGTACAAGTTTCTGCTCAAATCCATTGTAAGTTGCGGCATTGGCGAACAAACTTACGCCCCAAGAAATGTCATTGAAGGCCGCGAAGCATCACCAACGCTGAACGACGGGATCTCAGAGATGGAAGAGTTTTTCGACGACAGCATTGCAAAACTCCTTGCAAGATCAGCTACTTCCCCTTCCGAAATCGATGTTCTTGTTGTCAACATCTCAATGTTCACCTCTGTTCCCTCACTATCGTCGCTTATCATTAATCGTTACAAACTGAGACACGACGTAAAAGTGTACAATATCACTGGAATGGGTTGTAGTGCTAGTCTTATATCAGTAGATATTGTTAAAAACATTTTCAAATCACAAAGAAACAAGTTAGCACTTTTGGTCACATCAGAGTCTCTTAGTCCAAATTGGTATCCTGGTAGTAATAGATCAATGATCTTAGCCAATTGTCTTTTTCGCACCGGCGGTTGTGCCATTCTTTTGACAAACAAAAGATCCTTAAAGAACAAAAGTATATTGAAATTGAAGTGTTTAGTAAGGACGCACCACGGCGCCAGAGATGACTCGTATAACTGTTGCCTTAAAAAGGAAGACGAGCGCGGTGCAGTTGGTTTTTATTTATCGAAAACTCTCCCGTTGGTAGCAACAAGAGCTTTTGTTGAGAATTTAAGGGTAATTTCACCCAAAATTTTGCCAATAAGGGAACTTGTTAGGTTTCTGGTTGTATCGCATTTTAAGAAACTTAAGATAGCTAGTTTTTGTAGTTCTAAGTCTTCTAGTGGTGGAGGAACAAAAAGTACTAAATCACCATTGAATTTTAAAACTGGTGTTGATCATTTTTGCCTCCATACAGGAGGAAAAGCAGTGATTGATGGAGTTGGAAAGAGTTTAGATCTAAGTGAATATGATCTTGAGCCTGCAAGGATGACACTACATCGTTTTGGTAACACTTCTGCTGGTAGTTTGTGGTATGTGTTAGGGTACATGGAAGCCAAAAAGAGGCTAAAAAAAGGTGATAGAGTTTTTATGATAAGCTTTGGTGCTGGATTTAAATGCAATAGTTGCTTATGGGAAGTGATGAAAGATGTTGGAGATGCAAATGTATGGGAAGATTGTATTGATGATTATCCACCAGAGTCTTTGATCAATCCTTTCATGGAGAAGTATGGTTGGCTCAATGAAGTTGAGGATGAAACCAACTTTGAACTTCCTGAATTTCTTAAGTGA 1422 0.3847 MEFLSLLYGVLALYICFLIWKLLDQKRDQECYILDYQCYKPTQDRMLGTEFCGKLIRRTENLGLNEYKFLLKSIVSCGIGEQTYAPRNVIEGREASPTLNDGISEMEEFFDDSIAKLLARSATSPSEIDVLVVNISMFTSVPSLSSLIINRYKLRHDVKVYNITGMGCSASLISVDIVKNIFKSQRNKLALLVTSESLSPNWYPGSNRSMILANCLFRTGGCAILLTNKRSLKNKSILKLKCLVRTHHGARDDSYNCCLKKEDERGAVGFYLSKTLPLVATRAFVENLRVISPKILPIRELVRFLVVSHFKKLKIASFCSSKSSSGGGTKSTKSPLNFKTGVDHFCLHTGGKAVIDGVGKSLDLSEYDLEPARMTLHRFGNTSAGSLWYVLGYMEAKKRLKKGDRVFMISFGAGFKCNSCLWEVMKDVGDANVWEDCIDDYPPESLINPFMEKYGWLNEVEDETNFELPEFLK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1818 473 SUPERFAMILY Thiolase-like 26 425 IPR016039 GO:0016746
Mtr4g1818 473 Gene3D - 69 424 IPR016039 GO:0016746
Mtr4g1818 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 342 423 IPR013747 -
Mtr4g1818 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 456 IPR012392 GO:0006633|GO:0016020|GO:0016747
Mtr4g1818 473 CDD CHS_like 12 422 - -
Mtr4g1818 473 Pfam FAE1/Type III polyketide synthase-like protein 25 308 IPR013601 GO:0006633|GO:0016020|GO:0016747
Mtr4g1818 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 463 - -
Mtr4g1818 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 463 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1818 Mtr-Chr4 31241262 31243069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1818 19 470 Acyl Lipid Metabolism Gene Families AT2G28630 69.518 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1818 K15397 - gmx:100810048 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1818 4 31241262 31243069 Mtr4g1818 4 31241262 31243069 ECH
Mtr2g3311 2 47184574 47186991 Mtr4g1818 4 31241262 31243069 ECH
Mtr2g3311 2 47184574 47186991 Mtr4g1818 4 31241262 31243069 PCT