Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1729 ATGTACAAGAACCAGCTACAAGAGCTGGCACAAAGAAGCTGTTTCAACCTACCTTCATACACGTGCATAAGAGAAGGTCCTGATCACGCGCCGCGGTTTAAAGCTACCGTTAACTTTAACGGCGAGATCTTTGAAAGTCCTCAGTACTGTACAACACTTCGTCAAGCTGAACATTCAGCTGCTGAGGTGGCACTTAGTTCTTTGTCTCATCGTGGTCCTTCTCATTCTCTTGCTGCAAAAATCCTTGATGAGACGGGAGTGTACAAGAATCTCTTACAAGAAATTGCACAAAGGGTAGGGGCTCCATTGCCGCAGTACACAACTTTCCGGTCAGGCTTAGGACATCTACCTGTTTTTACCGGGACGGTGGAATTAGCTGGAATTACATTCACTGGCGAACATGCCAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCGTCTCTAAAGCAATTGGCGAAAGAAACTGCAAGCTCTTCAACTGAACCGGAGAACAATGACGAACTAGAACAGATCACCATAGCACGAGCCTTACTGAATTACCGTCTGAAGGAAAAGATGGCAATGTCAAATCCAAATGCTATGATTTCATTTCCAATGAAGTTTCAGTTTCAAAATCCAAGGCCAACCAGCCCTCAACCTCGGCCAGCAACATCAAAGATTCTTCCTCTAATTTGCCAAAAGACAGCACCTCGAAGCAGGCATCCCGCAACGGCGTCAGCCAGCAGTGATCACAGTTCCATTATGTCACCGTTTTCTTCTACACCAGAAAGCCGATGGACCCGTCGCCCGAAATTCCCTGCGGCAGGAGCAGCACCTTATGTTCCCATTCGACATATGCGATCATCATGCCAGGGAGTTGCACCTCCAGTTACCGTAAGGAATGCAATACCTGTATTCTCCCCGCCACCAGCCGCCGTGTCCCCTCAAGTAATGCGGCCACTTCCTGTACGAGTTGCTCCCCCGATCAATATTCGGCAAGTAGTTCCAGTATATGCTTCTGCTCCACCGGTTCGAAAAGATGAACCTATTCCCATCAGCAAAAATGATCTGGCACAAGTACTAAATGCTGCTACACCGCTTCGAGTAGATGAACCTGTTCCCATCAGTAAAGTCGATCCAGCACCTGTAGTTTATGCCGCTCCACCAGTTATAATAGATGAACCTGTTACCGTCAGCAAAGTTGATCCATCACCAGCAGAAAATGCTGCCCTACCAATTCCAGTAGATGAACCTGTTCCTATCAGCAAAGATGATCCAGCAGCTTCAGCAGTTAAAATAGATGAAACTGTTCTTGTCAGCAAAGATGACCCAGCACCAACCAGTGATTCAGATAAAACCGACACCAAAACTGAGAATATTCCAGCAGGATCTGAAACAGTGCAGAGGTTGGAGCAGCTGAAAATTTGA 1422 0.4669 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCTTLRQAEHSAAEVALSSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGTVELAGITFTGEHAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMAMSNPNAMISFPMKFQFQNPRPTSPQPRPATSKILPLICQKTAPRSRHPATASASSDHSSIMSPFSSTPESRWTRRPKFPAAGAAPYVPIRHMRSSCQGVAPPVTVRNAIPVFSPPPAAVSPQVMRPLPVRVAPPINIRQVVPVYASAPPVRKDEPIPISKNDLAQVLNAATPLRVDEPVPISKVDPAPVVYAAPPVIIDEPVTVSKVDPSPAENAALPIPVDEPVPISKDDPAASAVKIDETVLVSKDDPAPTSDSDKTDTKTENIPAGSETVQRLEQLKI* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1729 473 MobiDBLite consensus disorder prediction 407 473 - -
Mtr4g1729 473 Gene3D - 2 83 - -
Mtr4g1729 473 SMART DRBM_3 88 154 IPR014720 -
Mtr4g1729 473 SMART DRBM_3 2 69 IPR014720 -
Mtr4g1729 473 Gene3D - 84 155 - -
Mtr4g1729 473 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Mtr4g1729 473 MobiDBLite consensus disorder prediction 234 267 - -
Mtr4g1729 473 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Mtr4g1729 473 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Mtr4g1729 473 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 353 - -
Mtr4g1729 473 PANTHER - 1 353 - -
Mtr4g1729 473 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Mtr4g1729 473 MobiDBLite consensus disorder prediction 237 264 - -
Mtr4g1729 473 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Mtr4g1729 473 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Mtr4g1729 473 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Mtr4g1729 473 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1729 Mtr-Chr4 29981990 29986116 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1729 - - gmx:100816445 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1729 4 29981990 29986116 Mtr4g1729 4 29981990 29986116 ECH
Mtr2g3246 2 46395212 46399479 Mtr4g1729 4 29981990 29986116 PCT