Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1641 ATGGTAACCGCCGTAATTCTGTTCACCGTCACGGTGGTTCTCTCATCGACGGTAGCTTCATCTCCGGTAACACTAACACTTGAAAGAGCTTTTCCTTCAAATCATGGAGTTGAATTGAGTCATCTTAAAGCATTGGATACTTTCAGACATCAACGATTTTTGCAGTCTACTACTAGTTATGTTGTTAATTTTCCTGTTAAAGGATCCTTTGATACCTCTAAAGCTGGGCTTTACTTTACAAAGGTGAATTTGGGTACTCCTCCAAGAGAATTTTATGTTCAGATTGATACTGGAAGTGATGTTCTTTGGGTTAGTTGTGCTTCCTGCGTGGGTTGTCCCCAAACAAGTGGTCTCCAAATTCAGCTCAATTACTTTGACCCTAGGAGTTCATCGACATCTTCATTCATCGCTTGTTCTGATCAAAGGTGCAAGAATGGAGTACAGTCATCAGATAGCAGCTGTTCCGGTCGGAATAACCAATGCACTTATATATTCCAGTATGGAGATGGTAGTGGAACATCAGGCTATTATGTGTCAGACTTTATGCATTTTGCTAGTATTACTCAGGAATCTTTGTTGTCAAACTCCTCGGCGCCTGTGGTTTTTGGTTGTAGCAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAATTGATGGTATATTTGGCTTTGGGCAACAGGGCATGTCAGTAATTTCCCAGCTTGCTTCACAAGGAATTGCACCAAGAGTTTTCTCACACTGCTTGAAAGGAGATAGTAGCGGTGGCGGCTTATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAATTTATAGTCCACTCGTTCCGTCACAGCCCCATTATAATCTAAATCTTTTGAGCATCTCTGTCAATGGCCAAATTTTGCCAATTGATTCGGCTATTTTTGCTACATCAAGCAATAGAGGCACCATTATTGATTCCGGAACAACTTTGGCATACATTGCCGAAGAGGCTTACAATCCCTTTATCAATGCGATTACAGCTGCTATTCCACAATCTGTACGCACTGTTCTTTCCAGAGGAAATCAGTGTTACTTAGTTACCAACAGCCTTGATAGTTTTCCTCAAGTAAGTCTGAATTTTGCTGGTGGTGCTTCTCTCGTTTTAGGAGCACAGGACTACCTTATAAAGCAGAATTATATTGGAGATGGATCAGTGTGGTGTATTGGCTTTCAGAAAATTGCAGGTCAAGATATAACAATTCTAGGAGACCTTGTATTAAAAGACAGAATTTTTGTCTATGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGACTGTTCCTTGTCGGTTAATGTTTCTGCATCATCTGGTAACGGCAGAAGTGAGTTTGTTAACGCGGGAAACATAAGTGGAAGCACTTCTTTGCGTGATGGATCTCACAAGTTGATAAAGAGAAGAGTGATCATTGCTATATTCATGCACATAACACTAATATGCTATTTTGTATTTTTGTAG 1485 0.4088 MVTAVILFTVTVVLSSTVASSPVTLTLERAFPSNHGVELSHLKALDTFRHQRFLQSTTSYVVNFPVKGSFDTSKAGLYFTKVNLGTPPREFYVQIDTGSDVLWVSCASCVGCPQTSGLQIQLNYFDPRSSSTSSFIACSDQRCKNGVQSSDSSCSGRNNQCTYIFQYGDGSGTSGYYVSDFMHFASITQESLLSNSSAPVVFGCSNQQSGDLTKSDRAIDGIFGFGQQGMSVISQLASQGIAPRVFSHCLKGDSSGGGLLVLGEIVEPNIIYSPLVPSQPHYNLNLLSISVNGQILPIDSAIFATSSNRGTIIDSGTTLAYIAEEAYNPFINAITAAIPQSVRTVLSRGNQCYLVTNSLDSFPQVSLNFAGGASLVLGAQDYLIKQNYIGDGSVWCIGFQKIAGQDITILGDLVLKDRIFVYDLAGQRIGWANYDCSLSVNVSASSGNGRSEFVNAGNISGSTSLRDGSHKLIKRRVIIAIFMHITLICYFVFL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1641 494 Pfam Xylanase inhibitor N-terminal 78 263 IPR032861 -
Mtr4g1641 494 Pfam Xylanase inhibitor C-terminal 281 432 IPR032799 -
Mtr4g1641 494 ProSiteProfiles Peptidase family A1 domain profile. 78 432 IPR033121 -
Mtr4g1641 494 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 453 - -
Mtr4g1641 494 CDD pepsin_A_like_plant 78 436 IPR034161 -
Mtr4g1641 494 PANTHER ASPARTYL PROTEASES 5 453 IPR001461 GO:0004190|GO:0006508
Mtr4g1641 494 Gene3D Acid Proteases 50 264 IPR021109 -
Mtr4g1641 494 Gene3D Acid Proteases 265 442 IPR021109 -
Mtr4g1641 494 SUPERFAMILY Acid proteases 75 439 IPR021109 -
Mtr4g1641 494 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Mtr4g1641 494 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Mtr4g1641 494 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1641 Mtr-Chr4 28742034 28747243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1641 51 437 Miscellaneous Gene Families AT1G44130 27.586 2.41e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1641 - K00924 gmx:100789004 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1641 4 28742034 28747243 Mtr4g1641 4 28742034 28747243 ECH
Mtr2g2830 2 41806366 41810970 Mtr4g1641 4 28742034 28747243 PCT