Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1580 ATGAATTCTGGAACCATGCAAGACTTTCTGAAAGGAAAGACCATTTTAGTGACTGGCACAACAGGGTTCTTAGCCAAAGTTTTTGTGGAAAAGATATTACGGATTCAACCAGATATACAAAAGCTTTATCTTCTCATAAGAGCTTCAAATACTGAGTTGGCCTCTCATCGCATGCAAAATGAGGTGTTTCAGACAGATTTGTTTCGAGTGCTAAGAGATAAGTTGGGTGGAGGTTTTAATTCATTTATATCAAAGAAGGTTGTAGCAGTAGCAGGAGATGCTGCAGTTGAAAATTTGGGAATAAAAGACAATACCATATTAAATGTGATGTTTGAAGAGATAGACCTTATTGTCCATTCCGCTGGAACTACCAATTTTAATGAAAGATTTGACATTTCAATGGGTGTTAATACAATGGGAGCTTTACATGTCTTAAACGTTGCAAAAAAGTGTCGCAAAATAAATGTCCTTGTCCACATATCTACGGCTTATGTATGTGGGGAGACTAAGGAAGGAAAGCCAATATTTCAAGAGAAGCCATTTGAGATGGGTCGTCAATCTCTAGAAAGGACTCTAAAACTAGACATACACACAGAAATGAATTTGCTGGAGAAAAAATTAGATGAATTACGAGCAATGAATGTGGATGAAAAAACAATCAAGCATGCGTTGAAAGATTATGGAATTGAAAGAGCAAATTTGCATGGTTGGCCAAACACATATGTATTCACAAAAGCAATGGGAGAGATGCTTTTAGTTCATCATAAAGATAATGTTCCATTGATCATTATACGTCCAACAATGGTAACTAGTACAAGCAAAGATCCATTTCCAGGTTGGATTGAAGGTCAAAGAACTGTTGATAGTATGATATGTGCCTATGGTAAAGGGAAACTGCCATATTTTCTTGGTAATCCCAGGACAATTTTAGATATCATGCCTGCAGATTTGGTCATCAATTGTGTGATTGCTGCCATTGTTATTAATTTAAATAAAGCTCCTAAAAATTTCATCTACCATGTTTCTTCTTCATTAAGAAATCCTCTCAAAATTTCTGATGTCCACAACATTTCCCATCAATATTTCAAGAAAACTCCTTGCCTAGACGAAGATGGAAAGCCAATAGTCATCTCTAAGGGAATTGCCTTGAAAAGTATGGCTGCTTTTAACATTTATACAGAGACCCGATATGTCCTGCCACTTGAGGTCTTAAATTTGGTGAACAAGCTGATTTGCCATTCCTTCCAAGATGTTTATGATGATAACTACAAGAAAATACGAATCGTGAAGCGACTTGCAAAACTATACAAACCTTACGTGTTTTTTAAAGCAGTCTTTGATGATACAAACACGGAAAATTTAAGAAGGGAAACTATGAGCTATAACATGGAGAATGGAATGCTAGAATTTGACCCGATTAGCATTAATTGGACAAACTACATGATGAATACGCACATTCCTGGTCTCGTCAAGTATGCAATGAAATAA 1488 0.3609 MNSGTMQDFLKGKTILVTGTTGFLAKVFVEKILRIQPDIQKLYLLIRASNTELASHRMQNEVFQTDLFRVLRDKLGGGFNSFISKKVVAVAGDAAVENLGIKDNTILNVMFEEIDLIVHSAGTTNFNERFDISMGVNTMGALHVLNVAKKCRKINVLVHISTAYVCGETKEGKPIFQEKPFEMGRQSLERTLKLDIHTEMNLLEKKLDELRAMNVDEKTIKHALKDYGIERANLHGWPNTYVFTKAMGEMLLVHHKDNVPLIIIRPTMVTSTSKDPFPGWIEGQRTVDSMICAYGKGKLPYFLGNPRTILDIMPADLVINCVIAAIVINLNKAPKNFIYHVSSSLRNPLKISDVHNISHQYFKKTPCLDEDGKPIVISKGIALKSMAAFNIYTETRYVLPLEVLNLVNKLICHSFQDVYDDNYKKIRIVKRLAKLYKPYVFFKAVFDDTNTENLRRETMSYNMENGMLEFDPISINWTNYMMNTHIPGLVKYAMK* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1580 495 Pfam Male sterility protein 17 321 IPR013120 -
Mtr4g1580 495 Gene3D - 4 376 - -
Mtr4g1580 495 Pfam Male sterility protein 397 495 IPR033640 -
Mtr4g1580 495 CDD FAR-N_SDR_e 13 366 - -
Mtr4g1580 495 CDD FAR_C 396 494 IPR033640 -
Mtr4g1580 495 PANTHER FATTY ACYL-COA REDUCTASE 6 492 - -
Mtr4g1580 495 Coils Coil 193 213 - -
Mtr4g1580 495 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 336 IPR036291 -
Mtr4g1580 495 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 492 IPR026055 GO:0080019
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1580 Mtr-Chr4 27576424 27583458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1580 9 446 Acyl Lipid Metabolism Gene Families AT3G44560 50.682 5.81e-149 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1580 K13356 - rcu:8277590 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1580 4 27576424 27583458 Mtr4g1580 4 27576424 27583458 ECH
Mtr2g2865 2 42269827 42275685 Mtr4g1580 4 27576424 27583458 PCT