Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1549 ATGGAAATTGGTCACCCTACTAATGTGCGCCATCTTGCACATGTCACCTTTGATAGGTTTAATGGTTTCTTGGGTTTGCCTCTTGAGCTTGTACCTCAAGTCCCCACTACACCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACGGAATCCATGAAACTATCATATGACAGAAGAGGGAACATTGTACCAACGATTTTACTACTAATCCAAGAACACTTGTATGCTCAAGGAGGATTACAGGCAGAGGGAATTTTCAGAATTAATGCAGACAATAGACAAGAGGAATATCTTAGGGATCAATTAAATAAAGGAGTGGTCCCAGAAGACATTGATGTACATTGTTTGGCAGGATTGATTAAGGCTTGGTTTAGGGAGTTACCAAGAGGTGTTCTGGATTCTTTATCTCCAGAGCAGGTAATGACTTGTCAGACAGAAGAAGATTGCGCCGAACTGATGAGTCAGTTACCTCATACCGAAGCTTCACTTTTGAACTGGACTATCAATCTGATGGCTGATGTTGTACAAGAGGAGCATCTGAATAAGATGAATGCACGCAACATTGCCATGGTTTTTGCACCAAACATGACTCGGATGGCAGACCCTTTGACTGCATTCATGTATGCAGTTCAAGTGATGAACTTTTTGAAGACACTTGTATCAATGACACTGAAGGAAAGGAATGATTCTGATGTAGAATCATCACCTGAATTTTATATAGAGCCATTTGATGAGAATGAGGAACATAGTCATTGTAACTCCTTCCAGCAAGATGTTGCAACAGAAAATGAAATGCTAAGCAATGAAGCAATTTGA 819 0.4054 MEIGHPTNVRHLAHVTFDRFNGFLGLPLELVPQVPTTPPSASATVFGVSTESMKLSYDRRGNIVPTILLLIQEHLYAQGGLQAEGIFRINADNRQEEYLRDQLNKGVVPEDIDVHCLAGLIKAWFRELPRGVLDSLSPEQVMTCQTEEDCAELMSQLPHTEASLLNWTINLMADVVQEEHLNKMNARNIAMVFAPNMTRMADPLTAFMYAVQVMNFLKTLVSMTLKERNDSDVESSPEFYIEPFDENEEHSHCNSFQQDVATENEMLSNEAI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1549 272 ProSiteProfiles CRIB domain profile. 3 16 IPR000095 -
Mtr4g1549 272 ProSiteProfiles Rho GTPase-activating proteins domain profile. 48 228 IPR000198 GO:0007165
Mtr4g1549 272 SMART RhoGAP_3 62 222 IPR000198 GO:0007165
Mtr4g1549 272 SMART PBD_5 3 37 IPR000095 -
Mtr4g1549 272 PANTHER MKIAA1688 PROTEIN 1 266 IPR044785 GO:0005096
Mtr4g1549 272 Pfam P21-Rho-binding domain 2 28 IPR000095 -
Mtr4g1549 272 PANTHER PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN 1 266 - -
Mtr4g1549 272 CDD CRIB 1 41 - -
Mtr4g1549 272 Gene3D Rho GTPase activation protein 36 233 IPR008936 GO:0007165
Mtr4g1549 272 Gene3D CRIB domain 1 31 IPR036936 -
Mtr4g1549 272 CDD RhoGAP 65 222 - -
Mtr4g1549 272 Pfam RhoGAP domain 65 199 IPR000198 GO:0007165
Mtr4g1549 272 SUPERFAMILY GTPase activation domain, GAP 43 222 IPR008936 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1549 Mtr-Chr4 27220881 27223495 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1549 - K20642 mtr:MTR_4g052850 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1549 4 27220881 27223495 Mtr4g1549 4 27220881 27223495 ECH
Mtr2g2887 2 42493725 42497162 Mtr4g1549 4 27220881 27223495 PCT