Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0249 ATGTCTAAAACAGATAGAACACAAACCAATTGTTCCACTACATTATTTGAGCTACTTACGGAAATGAAGAACCATTCCAGCATAGAACAAACAAATATTCAACCAAAATCACCATCAAACTTCTCCTCAGAATGCTGGTTCGACGACGCAACCATCCTAGACATGGACTACTTTGTGAAAACACTTTCTGGAATCAAAGCAAAAGGCGTTCGAGCTGACTTAATCGGTTCCATAATCACACACTATGCCTCCAAATGGCTCCCTGACGTAGCCGAAAAGGGTATAACACAATTTGAAGAATCACCAGAGAGTGTAACAACATCATGGATGAAGAAAAGGTTCTTTGTAGAAACCTTAGTTAATGTTCTACCACCAGAGAAAGATTCAATTCCATGTAACTTTCTCCTTAGGCTATTGAGAACAGCTAACATGGTAGGTGTTGATGGAAGCTATAGACAAGAGCTAGAGAAGAGAATTTCATGGCAGTTAGATCAAGCTTGTTTGAAAGAACTTGTTATTCCTTCTTTTAGTCACACTTGTGGGACACTTTTGGATTTTGAGCTTGTTATTAGGCTTGTTAAGAGGTTTGTTAGTTTGGATAATGAAGGTGCTAAAAGTGGTGCTGCTTTGGTTAAGGTTGCTAAGTTGGTTGATTCGTACCTTTGTGAAGCTGCTGTTGATGCTAATTTGAGGTTGGATGAGTTTGTTACTCTTGCTGGTGCTCTTCCAAGTCATGCTAGAGCTACTGATGATGGTTTGTATAGAGCCATTGATACTTACTTAAAAGCACATCCAAGTGTATCAAAGCAAGAAAGGAAGGGTCTATGCAGACTAATAGATTGCAGGAAACTAACACAAGAAGCATCACTTCATGCAGCACAAAACGAACGATTCCCGGTAAGAGCAGTAATACAAGTCCTTCTCTCAGAGCAAACAAAGCTCAACAGACACAATATCAATCACAACATGGATTGGAGTGGATCCATAATGAGCATCACAAGAAGTCCAACAAATGGATTTGGACTAGAAGCAGTTCCAACAGCACGATGTTTATCAAAGCGCGAAATGAATGCTCAACAGATAGAGATAAAGAAGCTAAGGGAAGATGTTCATAGGTTGCAGAGTCAGTGTAATGCAATGCAAGTTCAGATGGAGAGAATGGTTGAGAAGAAGAAAGGGTTTTTTAAGTGGAGTAAGAGGTTTGGTGTGCATGGTTTTGGTAAAGGAGAGAGTGTTTTGGAGAGAAGAGGAGAAGGTGTTGATGGAGATGGTGAGGTTGAGTTTGGAAGACAGACACCTGCTACTACTTCTGATATGAAAACTAGGTTGGTGAATGTCAAAGGAAATTGA 1350 0.3993 MSKTDRTQTNCSTTLFELLTEMKNHSSIEQTNIQPKSPSNFSSECWFDDATILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDVAEKGITQFEESPESVTTSWMKKRFFVETLVNVLPPEKDSIPCNFLLRLLRTANMVGVDGSYRQELEKRISWQLDQACLKELVIPSFSHTCGTLLDFELVIRLVKRFVSLDNEGAKSGAALVKVAKLVDSYLCEAAVDANLRLDEFVTLAGALPSHARATDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHNINHNMDWSGSIMSITRSPTNGFGLEAVPTARCLSKREMNAQQIEIKKLREDVHRLQSQCNAMQVQMERMVEKKKGFFKWSKRFGVHGFGKGESVLERRGEGVDGDGEVEFGRQTPATTSDMKTRLVNVKGN* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0249 449 Pfam NPH3 family 45 289 IPR027356 -
Mtr4g0249 449 PANTHER OS12G0117600 PROTEIN 1 448 IPR043454 -
Mtr4g0249 449 Coils Coil 356 390 - -
Mtr4g0249 449 ProSiteProfiles NPH3 domain profile. 44 313 IPR027356 -
Mtr4g0249 449 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0249 Mtr-Chr4 2981347 2984652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g0249 43 388 EF-hand Containing Proteins AT3G44820 32.011 5.99e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0249 - - cam:101500573 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0249 4 2981347 2984652 Mtr4g0249 4 2981347 2984652 ECH
Mtr2g3638 2 50377381 50380081 Mtr4g0249 4 2981347 2984652 PCT