Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g0195 ATGCAAACCAATATTAAGAAGATTGTTAATCTTGATGATCTTGTTGCTGGTCATAATAAACGTAGAATCATCCAACAAGCTGTGTTCAATGAGCTCTGCAATATCTTGGATCCTGGAAAGCCCGCTTTCACTCCCAAAAAAGGAAAAGCTAGTGTTGTCATGTTCGTTGGTTTACAAGGATCTGGGAAAACCACTACTTGTACAAAATATGCATTTTATCATCAAAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCGTTTGATCAGTTGAAGCAAAATGCAACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCTGTGGAAGGTGTGGAAAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGCGGCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGTCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATCTTTGTCATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTCATTATCACAAAAATGGATGGCCATGCAAAGGGTGGTGGTGCACTTAGTGCTGTTGCGGCTACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACACATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGCCAGGGAGACTTGTCTGGGTTCATGAACAAAATCCATGAAGTTGTTCCAATGGATCAACAGCCTGAACTGCTTAATAAGCTGCAAGAAGGAACCTTTACCTTGAGGATTATGTACGAGCAGTTTCAGAATATTCTTAAGATGGGTCCCATGAGCGAGGTTTTTTCTATGCTACCAGGATTTAGCAATGAATTACTACCAAAAGGCAAGGATCAGGACAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGACTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAGTCACGGATGATGCGTATAGCTCGAGGTTCTGGTCGGCAAGTTAGGGAAGTAATGGAGATGATGGAAGAGTACAAGCGTCTCGCAAAGATATGGAGCAAAATGAAAGGACTTAAAATACCAAAGAAGGGAGACATGAATAGCATGACTCGAAATATGAATGCCACCCACATGAGCAAAATCCTCCCTCCACAGATGCTAAAGCAAATTGGAGGTATGGGTGGGTTACAAAGCTTGATGAAATCGATGGGATCTAACAAGGACATGATGGGAATGTTTGGTGGCGGTGGCGAGCAGTAG 1338 0.4155 MQTNIKKIVNLDDLVAGHNKRRIIQQAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQGSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDLSGFMNKIHEVVPMDQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFSNELLPKGKDQDSQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGSGRQVREVMEMMEEYKRLAKIWSKMKGLKIPKKGDMNSMTRNMNATHMSKILPPQMLKQIGGMGGLQSLMKSMGSNKDMMGMFGGGGEQ* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g0195 445 Gene3D - 40 234 IPR027417 -
Mtr4g0195 445 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 444 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mtr4g0195 445 CDD SRP54_G 51 243 - -
Mtr4g0195 445 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 444 - -
Mtr4g0195 445 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 218 231 IPR000897 GO:0005525|GO:0006614
Mtr4g0195 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 247 IPR027417 -
Mtr4g0195 445 SMART SRP54_3 50 245 IPR000897 GO:0005525|GO:0006614
Mtr4g0195 445 Pfam SRP54-type protein, GTPase domain 51 245 IPR000897 GO:0005525|GO:0006614
Mtr4g0195 445 Pfam Signal peptide binding domain 276 376 IPR004125 GO:0006614|GO:0008312|GO:0048500
Mtr4g0195 445 SUPERFAMILY Signal peptide-binding domain 247 382 IPR036891 GO:0006614|GO:0008312|GO:0048500
Mtr4g0195 445 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 1 376 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Mtr4g0195 445 Gene3D - 260 408 IPR036891 GO:0006614|GO:0008312|GO:0048500
Mtr4g0195 445 Gene3D - 2 255 IPR042101 -
Mtr4g0195 445 SMART AAA_5 49 226 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g0195 Mtr-Chr4 2340642 2346799 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g0195 K03106 - gmx:100811698 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g0195 4 2340642 2346799 Mtr4g0195 4 2340642 2346799 ECH
Mtr2g3702 2 51082672 51088582 Mtr4g0195 4 2340642 2346799 PCT