Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4090 ATGGAAGACGCCGGAAGTTATCCAAATCCCGACAACCCATCGCACAAAATCGTTGACGTCGCTGCTGGTGAATCACACACTCTTCTTCTTACTGATGGCAGTGTATACTGTTGGGGTAGAGGAATGTTTGGACGGCTTGGTAATGGTTCTCAAAAAGATGAACTTTTCCCAAAAAAACTCAACTTTGGAAACCCTAATGGAACTCAAGACAGTGTTAAAATAGTGGGTATTGCTGCTGGTTCTTATCACACTCTTGCTCTTGCAGAAGATGGATCTGTTTGGTGCTGGGGTTACAATATATATGGTCAACTTGGTCTTTGTGAAGAGGAGGACTCGCATGATTCCTTAGTTCCTTGCTTACTTAGCAGGTTTCTTGAGTTGCAACCGCACAATTCTTCAACAGACCCATCTGAAGCAGAAGACAAAGCATCACTAGAGATGTGTACTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAATCGCGGAACCCTATGGATGTGGGGAAACATCCCACAAGAAAGCAAAGAAAGTGGGATATCTCTTGTAAGCAGTTTCACTCCAACGCCAGTCTGGGATTTTCACGGTCGAACTGTTGTCAAGGTTGCATGTGGAAACGAGCATGTCGTAGCTCTGGTTAATGCTATAGACTCACACGAGGATGAAGATCTACTATGCTACTCTTGGGGTTATAACAGCCATGGCCAATTAGGTTTGGGGGATAGGCAGAGCAGGCTGCATCCAGAAGTTGTAAAAATACTCGACGAGGAGTCTCCTTGGACAATTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTTGCTCACAAAAAGAAACCTGACGCCACATTAGAAAGCATGTGCTGGACCTTTGGCCTTGGTGAGAATGGCCAACTTGGACACGGAACAACGCAAAGCACTTTATTTCCTACTCCTGTTAAAGAATTGCCACAAAGCATACACCTTATTTCTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTGTCCTCAACTGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGTCCTGATGCTAATCGTGCTGAAACAAATTCTGGTGGTGACGCCCTCTCTCCTCTTCTCATCTCATGCAATTTACATCAACCCATTTTTCCAGGTCCCGTTAAAGTTGCATGTGGGGCAGCACATACTGTTGTTGTTGCTCAGGAGGGACATAAGGTTTGGTCTTGGGGTAGGGGGAGGAGTGGAGTTCTTGGGAATGGAAAAGAAATGGATAGTTACACTCCCACCATTGTTCCGTGGCCTCCAACAATTGAGGGCCTCGAAGAAGAGGAATTAAATAGCTCTGATGGGCAAGATAAGGTCGCAGAAAAAAAACCCGAAATAATAGCAGAAACAGATGAGAAATTATCCACGGCGTTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTATAATGGAGAAATATGCTAGTATACTTCATGGTTCAATTTTTGGAAAACCATTTAATGAGCAAGATATCCCTGTTTCATTGGGGAATTCTGGTTCAATGGATATTGCAAAAGAATGGGAGAACATGTTAGAGGCAGCAGATGATAGGAAGCTAGTTACGATGGAAATGTTTTACCGTGACATGCTTACCGGTGTGAAAGATAAATTAATGAAGAGAAAGATCAAAGAAATTATAAAGGAGTGTCTCGAATCTTCAGAGGTAATTAAATAA 1725 0.4348 MEDAGSYPNPDNPSHKIVDVAAGESHTLLLTDGSVYCWGRGMFGRLGNGSQKDELFPKKLNFGNPNGTQDSVKIVGIAAGSYHTLALAEDGSVWCWGYNIYGQLGLCEEEDSHDSLVPCLLSRFLELQPHNSSTDPSEAEDKASLEMCTVKAGGMMSLAIDNRGTLWMWGNIPQESKESGISLVSSFTPTPVWDFHGRTVVKVACGNEHVVALVNAIDSHEDEDLLCYSWGYNSHGQLGLGDRQSRLHPEVVKILDEESPWTIYEVACGAFHTALLAHKKKPDATLESMCWTFGLGENGQLGHGTTQSTLFPTPVKELPQSIHLISVDCGLFHTSVVSSTGDVWSWGMEKGLGLCPDANRAETNSGGDALSPLLISCNLHQPIFPGPVKVACGAAHTVVVAQEGHKVWSWGRGRSGVLGNGKEMDSYTPTIVPWPPTIEGLEEEELNSSDGQDKVAEKKPEIIAETDEKLSTALNELKLLQTKLSIMEKYASILHGSIFGKPFNEQDIPVSLGNSGSMDIAKEWENMLEAADDRKLVTMEMFYRDMLTGVKDKLMKRKIKEIIKECLESSEVIK* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 74 87 IPR000408 -
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 93 109 IPR000408 -
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 164 180 IPR000408 -
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 203 219 IPR000408 -
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 330 348 IPR000408 -
Mtr3g4090 574 PRINTS Chromosome condensation regulator RCC1 signature 400 421 IPR000408 -
Mtr3g4090 574 SUPERFAMILY RCC1/BLIP-II 9 317 IPR009091 -
Mtr3g4090 574 Coils Coil 463 483 - -
Mtr3g4090 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 91 163 IPR000408 -
Mtr3g4090 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 340 IPR000408 -
Mtr3g4090 574 Gene3D - 3 224 IPR009091 -
Mtr3g4090 574 Gene3D - 225 449 IPR009091 -
Mtr3g4090 574 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 574 - -
Mtr3g4090 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 77 87 IPR000408 -
Mtr3g4090 574 SUPERFAMILY RCC1/BLIP-II 262 435 IPR009091 -
Mtr3g4090 574 Pfam Regulator of chromosome condensation (RCC1) repeat 406 436 IPR000408 -
Mtr3g4090 574 Pfam Regulator of chromosome condensation (RCC1) repeat 341 400 IPR000408 -
Mtr3g4090 574 Pfam Regulator of chromosome condensation (RCC1) repeat 90 160 IPR000408 -
Mtr3g4090 574 Pfam Regulator of chromosome condensation (RCC1) repeat 227 276 IPR000408 -
Mtr3g4090 574 Pfam Regulator of chromosome condensation (RCC1) repeat 32 87 IPR000408 -
Mtr3g4090 574 Pfam Regulator of chromosome condensation (RCC1) repeat 291 336 IPR000408 -
Mtr3g4090 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 279 IPR000408 -
Mtr3g4090 574 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 2 574 - -
Mtr3g4090 574 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 266 276 IPR000408 -
Mtr3g4090 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 90 IPR000408 -
Mtr3g4090 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 164 216 IPR000408 -
Mtr3g4090 574 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 341 403 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4090 Mtr-Chr3 54681142 54684982 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4090 - - gmx:100815199 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4090 3 54681142 54684982 Mtr3g4090 3 54681142 54684982 ECH
Mtr3g4090 3 54681142 54684982 Mtr1g0010 1 147884 150736 PCT