Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4032 ATGTCTACATCTTATCTTCCTGCCACAACGGATTCAATTGCTCAGGCATTGGAGGCTAAAGACACTTCTGGCGCGATCTCCATTCTTTATCGTGTACTTGATGATCCATCTTCTTCACCAGAAGCTCTGCGTATGAAAGAGCAGGCTATCACAAATCTTACTGACCTTCTCAGGCAAGAGAACAGGGGAGAGGATCTGCGCAGCCTTCTCACTTCATTGAGGCCCTTTTTCTCCTTGATTCCCAAGGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAGATTTCACTGTGTAAAGAAATGGTGCAGTGGACTCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAATTGAGGCAAGACTTGCAGCGCTTCTGATGGAAACTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTTGTAGACATTGACTTGCTAGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCCCTCACGGCTGCTAGAACAGCTGCAAATGCTATTTATGTGCCTCCTGCTCAACAAGGGGCCATAGATCTTCAGAGTGGAATACTTCATGCTGAGGAGAAGGACTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAGTCTTTCAATGCTCTTGAAGACCCTAAGGCTATTTTCAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGTGGAATTATTTCTTCTAAAGCAGGATTGCAATATGTTGGGCCTGACTTGGATGCGATGAAAGCTGTTGCTGATGCTTATTCTAAGCGATCCCTTAAGTTTTTCGAAACTGCTTTGCAGGACTACAAGGCACAGTTGGGGGAAGACCCAATTGTTCACAGACACATTTCATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGGTTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATCGAGCTTCCAATTGATCACGTTGAGCGGAAGATGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCCGGATGCCTCGTTATATTCGATGATCCCAAGACTGATGCAATATACCCTGCAACTTTAGAGACCATTTCCAATGTTGGGAAAGTGGTTGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA 1269 0.4342 MSTSYLPATTDSIAQALEAKDTSGAISILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAYSKRSLKFFETALQDYKAQLGEDPIVHRHISSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4032 422 SUPERFAMILY TPR-like 123 317 IPR011990 GO:0005515
Mtr3g4032 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Mtr3g4032 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Mtr3g4032 422 Pfam PCI domain 285 386 IPR000717 -
Mtr3g4032 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Mtr3g4032 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 3 422 - -
Mtr3g4032 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 129 IPR040773 -
Mtr3g4032 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Mtr3g4032 422 PANTHER - 3 422 - -
Mtr3g4032 422 Gene3D - 46 421 - -
Mtr3g4032 422 SMART PINT_4 320 403 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4032 Mtr-Chr3 54013949 54017419 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4032 K03036 - gmx:100780845 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4032 3 54013949 54017419 Mtr1g0108 1 1171982 1175688 PCT