Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0108 ATGTCTTCTTTCCTTCCTGCCACAACAGAGTCTATTGCTCAGGCATTGGAGGCTAAAGACCCATCTGAGTCTATCTCCATTCTTTATCGTGTGCTTGGTGATCCTTCTTCATCCCCTGATGCTCTGCGCATGAAAGAGCAGGCTATCACAAACCTCACCGACCTTCTCAGGCAAGAGAATAGGGCAGAAGATCTGCGCAGCCTTCTCACTCAGTTGAGGTCATTCTTTTCCTTGATTCCCAAGGCAAAAACTGCAAAGATTGTGAGGGGAATAATTGATTCTGTTGCTAAAATACCAGGGACATCTGAGTTACAAATTTCACTATGCAAAGAAATGGTGCAATGGACTCGCGATGAAAAGCGTACCTTTCTGAGGCAGCGAATTGAGGCAAGGCTTGCTACTCTTCTGATGGAAAGTAAGGAATATTCACAAGCTTTGACTCTCCTTAGTGGCTTGGTCAAAGAGGTTAGAAGGCTAGATGACAAACTCCTACTTGTAGACATAGACTTGCTTGAAAGCAAGCTACACTTCTCCTTAAAAAATCTTCCCAAAGCAAAAGCTGCCCTCACAGCTGCAAGAACAGCTGCAAATGCTATTTATGTTCCACCAGCTCAACAAGGTGCCATAGATTTGCAGAGTGGGATTCTTCATGCTGAAGAGAAAGATTACAAAACTGCATACAGTTATTTCTTTGAAGCTTTTGAGTCTTTCAATGCTCTTGAAGATCCCAAAGCTGTCTTTAGCCTGAAATACATGTTGCTGTGTAAGATCATGGTTAGTCAAGCCGATGATGTGGCTGGAATCATATCCTCTAAAGCAGGCCTGCAATATCTTGGACCTGATCTGGATGCAATGAAAGCTGTTGCAGATGCTCATTCCAAAAGATCCCTGAAATTGTTTGAAACTGCTTTACGAGACTTCAAGGCACAGTTGGGTGATGATCCAATTGTTCATAGGCACTTGACATCCCTGTATGATACCCTTCTGGAGCAGAATCTTTGCAGATTGATTGAACCATTCTCAAGGGTTGAAATTGCACATATTGCTGAACTTATTGAGCTTCCCATTGATCACGTGGAGCGAAAGATGTCTCAGATGATTTTGGACAAGAAATTCGCCGGGACATTGGATCAAGGTGCTGGATGCCTTGTCATCTTTGACGATCCTAAAACTGATGCTATATATCCTGCAACTTTAGAGACCATTTCTAATGTTGGGAAAGTCGTGGACAGTCTTTTTGTTAGGTCTGCCAAGATAATGACATGA 1266 0.4289 MSSFLPATTESIAQALEAKDPSESISILYRVLGDPSSSPDALRMKEQAITNLTDLLRQENRAEDLRSLLTQLRSFFSLIPKAKTAKIVRGIIDSVAKIPGTSELQISLCKEMVQWTRDEKRTFLRQRIEARLATLLMESKEYSQALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLKNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFETALRDFKAQLGDDPIVHRHLTSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLFVRSAKIMT* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0108 421 SMART PINT_4 319 402 IPR000717 -
Mtr1g0108 421 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 392 417 IPR040780 -
Mtr1g0108 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 2 420 - -
Mtr1g0108 421 ProSiteProfiles PCI domain profile. 222 390 IPR000717 -
Mtr1g0108 421 SUPERFAMILY TPR-like 127 322 IPR011990 GO:0005515
Mtr1g0108 421 SUPERFAMILY "Winged helix" DNA-binding domain 313 395 IPR036390 -
Mtr1g0108 421 Pfam PCI domain 284 385 IPR000717 -
Mtr1g0108 421 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 13 128 IPR040773 -
Mtr1g0108 421 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 319 402 - -
Mtr1g0108 421 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 420 - -
Mtr1g0108 421 Gene3D - 45 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0108 Mtr-Chr1 1171982 1175688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0108 K03036 - pop:7457878 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4032 3 54013949 54017419 Mtr1g0108 1 1171982 1175688 PCT