Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3993 ATGGCCGATGACAAAGCAGTTGAGGAAGGTGAAAAGAAGGAGACAAGTCCTACTGCTACTGCTTCTGGGAATGTAAAGAAGAAGCGCAAAGGATTCATTTCCCGAATTTGGAATGGGATTTTTAGGTTACACGGCGATGATTTTGAGAAGCGCCTTAAACATATTTCTAAAGAGGAAGCTACTGTTATTGCTCGAGTCACCAGGAGATCACGATCCAGGCGCCAGACTTCCCGCAATCTTATTGTTTTTTCTGTTATATTTGAGGTCATTGCTGTAGGTTATGCTATTATGACAACAAGATCGGTGGGTATTGATTGGAAAATGAGGGCGATCCGGGTTTTACCGATGTTTCTTTTGCCTGCACTATCATCTGCTGTTTATTCAGCATTTATCACCTTCACACGAATGTGTGATCGTAGGGACCAGAACATTCTTGAAAAGCTTAGAGCTGAAAGGCAAGCAAAAATTGATGAGCTCAAAGAAAAGACAAATTATTACACTACACAACAGCTTATTCAGAGATATGACCCAGACCCAGCAGCAAAGGCAGCTGCTGCAACTGTTTTGGCTTCCAAATTGGGTGCAGATTCTGGTATGAGATTGTACATGGGTGATGAATCCAATCTCAGTGGTGCTTCAACAGGGAAGAGCAATGATGTTGAACTTGTGCAGTCCTCTGGACTTCGAAATCGGAAACAAGTTCAAACTAGATCCACTAGTCCAGGGACATCCACGCCAAATTTTGCTGATCAACAATTAGCAGGTTCAGGGGGATTCGATCAAACCCAGACCTCTGAGTATAATCAACATGCTGTCGTCGAACATCACCAACCTCAAAGTTCAACCCCACAAGATGGAGGATGGATTGCAAGAATTGCAGCGTTGCTTGTGGGTGAGGATCCAACGCAGTCTTATGCTCTCATATGCGGTAACTGCCACATGCATAACGGTCTTGTTCGGAAGGAGGATTTCCCATTTATCACTTATTACTGCCCACATTGCCATGCTCTGAACAAACCAAAGCAATTGGACGGGAGTGTCTCCGGTCTTGCTTCCCCAAATGCAGGGTCAGTGCAAATGGATGAGGGTATCTTGGGCCTTCCTTCCCTTAATGTAGGGTCTGTGCAAATGGATGAGCGTATCTCGGGCCTTCCTTCCCTTAATGTAGGGTCTGTGCAAATGGATGAGCGTATCTCAGGCCTTCCTTCCCCTAATGCAGGGTCTCCAAAAACAGGCGATGGTGAGGCAATTTTAAATGCTAATGCTTCTGCTGCAGAGAGCATAATCACAAGCAATGGTCCCGTAAATGCTAGCCCTGAGGCTGAGAAAGTATCAGAAATGACAAATTTAGAGGAGAAAACTGATTGA 1368 0.4481 MADDKAVEEGEKKETSPTATASGNVKKKRKGFISRIWNGIFRLHGDDFEKRLKHISKEEATVIARVTRRSRSRRQTSRNLIVFSVIFEVIAVGYAIMTTRSVGIDWKMRAIRVLPMFLLPALSSAVYSAFITFTRMCDRRDQNILEKLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGMRLYMGDESNLSGASTGKSNDVELVQSSGLRNRKQVQTRSTSPGTSTPNFADQQLAGSGGFDQTQTSEYNQHAVVEHHQPQSSTPQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLVRKEDFPFITYYCPHCHALNKPKQLDGSVSGLASPNAGSVQMDEGILGLPSLNVGSVQMDERISGLPSLNVGSVQMDERISGLPSPNAGSPKTGDGEAILNANASAAESIITSNGPVNASPEAEKVSEMTNLEEKTD* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3993 455 MobiDBLite consensus disorder prediction 1 24 - -
Mtr3g3993 455 MobiDBLite consensus disorder prediction 399 455 - -
Mtr3g3993 455 MobiDBLite consensus disorder prediction 225 262 - -
Mtr3g3993 455 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 288 338 IPR019273 -
Mtr3g3993 455 MobiDBLite consensus disorder prediction 1 15 - -
Mtr3g3993 455 PANTHER INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296) 14 452 - -
Mtr3g3993 455 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 14 452 IPR040115 GO:0071786
Mtr3g3993 455 MobiDBLite consensus disorder prediction 423 438 - -
Mtr3g3993 455 Coils Coil 142 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3993 Mtr-Chr3 53678854 53683287 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3993 K23292 - gmx:100797087 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0155 1 1725464 1731412 Mtr3g3993 3 53678854 53683287 PCT