Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3910 ATGTCTAAAGTTCTCAGCTTTACCGGAGGTGATGATTTTTGTACTGGAAGGTCGATGTACCTTAACCCGAAGGAGGCGAGTCTCTTCTTGTCTCTTGGCCGTCAAGAATATGCTTACAGACCTCTTCAAAAGAGATCTCGCTTCAATGTTCCATTTGATTTCAGTGGAGAAAAATGGTTTGATCTGAAGCCAGAGACATCTATTGAAACATTGCCTGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGAAGGACAAGATAGGAGTTTATGTGCTTCTGTATCCAAGCGCTGGCTTACGCTTCTAAGCAGTATTTCCAAGAATGAAATCTGCAGCAACGCAAGTTCTGGAAACAAGGACAGTGACAATCAAGAATTTGGTGATGAAGGCTATCTTTCTCGAAGCTTAGAGGGGAAAAAGGCAACAGATGTTAGACTAGCTGCCATTGCTGTTGGCACACAATCTCGAGGAGGATTAGGGAAGCTTTCAATTCATGGAAGTAATCCAGATCGTGCCTTGACTGATGTAGGTCTCAAGGCAGTTGCTCATGGCTGCCCTTCTCTGAAGTCTTTCACTCTTTGGGATGTTGCTACCATTAGCGACGCAGGCTTGATCGAGATTGCTAATGGTTGTCATCAGATAGAGAATCTTGACCTATGCAAGTTGCCAACAATTTCTGACAAGGCTTTGATTGCAGTTGCAAAGCACTGTCCGAATCTGACTGAGTTATCGATAGAGTCATGTCCTAGCATCGGTAATGAAGGTCTACATGCTATTGGAAAGTTGTGTCCAAATCTAAGGTCCGTATCAATTAAAAACTGTCCTGGAGTTCGTGATCAGGGAATTGCTGGCCTTTTATGTTCAGCATCCATTATTCTAAAAAAGCTGACACTTGAATCGCTAGCTGTTTCTGATTACTCACTAGCAGTTATTGGACAATATGGCTTTGTAGTTACTGATCTTGTCCTAAATTTCCTTCCAAATGTAACCGAGAAAGGATTCTGGGTGATGGGTAATGGCCATGCACTGCAGCAACTAACGTCGCTCACAATTGGGCTGTGCCCTGGAGTAACAGATATCGGGCTTCATGCTGTAGGAAAGGGTTGTCCAAATGTGAAAAACTTTCAGCTTCGTAGGTGTTCATTTCTGTCAGACAATGGGCTGGTATCGTTCACCAAGGCTGCTCCATCAATTGTGAGCCTACAATTGGAAGAGTGCCATAGGATTACCCAATTTGGGGTTGCCGGTGCCATTTTAAACCGTGGTACAAAATTGAAGGTTCTTACTCTGGTAAGCTGCTACGGGATCAAAGATCTGAATCTCAATTTGCCAGCAGTACCTCCATGTCAGACAATTTCGTCATTATCAATCCGTAACTGCCCTGGAGTTGGTAATTTTACTCTCAACGTCCTTGGGAAGCTCTGTCCTACGCTTCAGTGTCTTGAATTGATTGGACTTGAGGGAATAACAGACCCAGGGTTTATTTCACTGCTTCAGAGGTCTAAGGCCAGTTTGGGTAATGTTAATCTAAGTGGTTGCATCAATCTGACAGATGTAGGAGTTTTGTCCATGGTCAAGTTGCATTGTTCGACTCTTGGAGTGCTAAACCTTAATGGTTGTAAAAAGGTCGGGGATGCTTCCTTGACAGCAATTGCAGACAATTGCATTGTCTTGAGTGATCTTGATGTTTCCGAGTGTGCAATCACCGATGCAGGGATTTCTGCCCTTACTCGTGGAGTCCTGTTCAATCTGGATGTACTTTCTTTGGCAGGTTGCTCATTGGTTTCAAACAAGAGCTTGTCTGCTTTGAAAAAATTGGGTGATTCCCTCGAGGGATTAAATATCAAAAATTGCAAGTCGATCAGCAGCCGCACAGTTAACAAGCTTGTGGAACATCTCTGGATGTGTGACATCCTCTTCTGA 1926 0.4367 MSKVLSFTGGDDFCTGRSMYLNPKEASLFLSLGRQEYAYRPLQKRSRFNVPFDFSGEKWFDLKPETSIETLPDECLFEILRRLPEGQDRSLCASVSKRWLTLLSSISKNEICSNASSGNKDSDNQEFGDEGYLSRSLEGKKATDVRLAAIAVGTQSRGGLGKLSIHGSNPDRALTDVGLKAVAHGCPSLKSFTLWDVATISDAGLIEIANGCHQIENLDLCKLPTISDKALIAVAKHCPNLTELSIESCPSIGNEGLHAIGKLCPNLRSVSIKNCPGVRDQGIAGLLCSASIILKKLTLESLAVSDYSLAVIGQYGFVVTDLVLNFLPNVTEKGFWVMGNGHALQQLTSLTIGLCPGVTDIGLHAVGKGCPNVKNFQLRRCSFLSDNGLVSFTKAAPSIVSLQLEECHRITQFGVAGAILNRGTKLKVLTLVSCYGIKDLNLNLPAVPPCQTISSLSIRNCPGVGNFTLNVLGKLCPTLQCLELIGLEGITDPGFISLLQRSKASLGNVNLSGCINLTDVGVLSMVKLHCSTLGVLNLNGCKKVGDASLTAIADNCIVLSDLDVSECAITDAGISALTRGVLFNLDVLSLAGCSLVSNKSLSALKKLGDSLEGLNIKNCKSISSRTVNKLVEHLWMCDILF* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3910 641 Gene3D Ribonuclease Inhibitor 61 288 IPR032675 -
Mtr3g3910 641 Gene3D Ribonuclease Inhibitor 289 445 IPR032675 -
Mtr3g3910 641 Gene3D Ribonuclease Inhibitor 446 640 IPR032675 -
Mtr3g3910 641 PANTHER UNCHARACTERIZED 16 632 - -
Mtr3g3910 641 SUPERFAMILY RNI-like 342 600 - -
Mtr3g3910 641 Pfam F-box-like 68 103 IPR001810 GO:0005515
Mtr3g3910 641 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 632 - -
Mtr3g3910 641 SUPERFAMILY F-box domain 59 105 IPR036047 GO:0005515
Mtr3g3910 641 SMART fbox_2 71 112 IPR001810 GO:0005515
Mtr3g3910 641 SUPERFAMILY RNI-like 173 414 - -
Mtr3g3910 641 Pfam Leucine Rich repeat 529 553 IPR001611 GO:0005515
Mtr3g3910 641 Pfam Leucine Rich repeat 558 577 IPR001611 GO:0005515
Mtr3g3910 641 Pfam Leucine Rich repeat 237 260 IPR001611 GO:0005515
Mtr3g3910 641 SMART LRR_CC_2 582 607 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 476 501 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 450 475 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 212 237 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 238 263 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 608 633 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 186 211 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 556 580 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 530 555 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 396 422 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 503 528 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 264 289 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 344 369 IPR006553 -
Mtr3g3910 641 SMART LRR_CC_2 370 395 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3910 Mtr-Chr3 52936890 52940412 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3910 K14515 - gmx:100805418 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3910 3 52936890 52940412 Mtr3g3910 3 52936890 52940412 ECH
Mtr1g0225 1 2543746 2547285 Mtr3g3910 3 52936890 52940412 PCT