Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0225 ATGTCTCAAGTCTTCGGCTTTTCTGGTGATAACTTTTGCCATGGTGGGTTATACACAAACCCCAAGGAAGCAAATTTCTTCCTGTCTCTTGGCCCTCAAGTTGATGTCTACTATCCACCTCAGAAGAGATCACGTGTCAGTGTTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACATCTATTGAATCTTTGCCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCTGTTGGTGAAGAAAGGAGTGCATCCGCTTGTGTTTCCAAACGCTGGCTTATGCTTCTAAGCAATATTTGCAAGAGTGAAATCTGTAGCAACAAAAGTACCTCCTCAAATGACGAGAATAAAATGGAATGTGACAGCGAAGAGTTTGGAGGTGAGGGATACCTTTCCCGCAGCTTGGAAGGAAAGAAGGCAACCGATGTCAGACTTGCTGCTATTGCAGTTGGAACTGCATCACGAGGAGGATTAGGGAAGCTTTCAATCCGTGGAAGCAACTCGGAACGCGGCGTGACAACTCTAGGTCTCAAAGCAGTTGCTAGTGGATGTCCTTCTCTAAAGTCTTTTTCTTTATGGAATGTTTCTTCTGTTGGTGATGAAGGCCTTATTGAGATTGCTAATGGATGTCAAAAACTAGAGAAGCTTGACCTTTGCAAATGCCCTGCAATTTCCGACAAGGCTTTAATCACAGTTGCAAAGAAGTGTCCGAATCTGACCGAGTTATCATTAGAGTCTTGTCCTAGCATTCGCAATGAAGGTCTACAAGCCATTGGAAAGTTCTGCCCAAATCTTAAGGCTATATCTATCAAGGACTGTGCCGGTGTTGGGGATCAAGGAATCGCTGGCCTGTTTTCTTCGACTTCTTTGGTTCTGACAAAGGTGAAGCTTCAGGCACTGGCTGTTTCTGATCTCTCTCTAGCTGTTATTGGACACTATGGCAAAACAGTTACCGATCTTGTCCTTAATTTCCTCCCAAATGTTAGTGAGAGAGGCTTCTGGGTTATGGGAAATGCTAATGGATTGCATAAACTGAAGTCACTCACAATTGCATCATGCAGAGGAGTAACCGATGTTGGGATTGAAGCTGTTGGAAAGGGCTGTCCTAATTTGAAAAGTGTACATCTTCATAAGTGTGCATTTCTCTCAGACAACGGATTGATTTCATTCACCAAGGCTGCTATATCACTTGAAAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTCGGCGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTTCTATGATAAGCTGCTTTGGGATCAAGGATCTGGACTTGGAATTGTCACCTGTATCTCCTTGTGAATCACTTCGTTCATTATCAATTTGTAATTGCCCTGGATTTGGCAACGCCACCCTTTCTGTACTCGGAAAGTTGTGCCCTCAGCTTCAACAAGTTGAATTGACTGGACTTAAGGGAGTGACAGATGCTGGGTTGCTTCCACTGCTCGAGAGCTCTGAGGCTGGTCTTGTCAAAGTCAATCTTAGCGGTTGCGTAAATCTTACAGACAAAGTTGTTTCATCCCTGGTCAATCTGCATGGTTGGACTCTTGAGATTCTGAACCTCGAAGGTTGTATAAACATCAGCAATGCTAGCTTGGCAGCAATTGCTGAACATTGCCAATTGCTTTGTGATCTTGATTTTTCCATGTGCACAATCTCTGATTCTGGGATAACAGCCCTGGCACATGCGAAACAGATCAATCTACAGATTCTTTCTTTGTCAGGTTGCACTTTGGTTACAGACAGGAGTTTGCCCGCTTTGAGAAAATTGGGCCACACCCTTTTGGGACTAAATATCCAGCATTGCAATTCAATCAGCAGCAGCGCGGTTGAGATGCTTGTTGAACATCTTTGGAGGTGTGACATCCTTTCCTGA 1932 0.4384 MSQVFGFSGDNFCHGGLYTNPKEANFFLSLGPQVDVYYPPQKRSRVSVPFVFDGEWFEQKQKTSIESLPDECLFEIFRRLPVGEERSASACVSKRWLMLLSNICKSEICSNKSTSSNDENKMECDSEEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGSNSERGVTTLGLKAVASGCPSLKSFSLWNVSSVGDEGLIEIANGCQKLEKLDLCKCPAISDKALITVAKKCPNLTELSLESCPSIRNEGLQAIGKFCPNLKAISIKDCAGVGDQGIAGLFSSTSLVLTKVKLQALAVSDLSLAVIGHYGKTVTDLVLNFLPNVSERGFWVMGNANGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAAISLESLQLEECHRITQFGFFGVLFNCGAKLKALSMISCFGIKDLDLELSPVSPCESLRSLSICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDAGLLPLLESSEAGLVKVNLSGCVNLTDKVVSSLVNLHGWTLEILNLEGCINISNASLAAIAEHCQLLCDLDFSMCTISDSGITALAHAKQINLQILSLSGCTLVTDRSLPALRKLGHTLLGLNIQHCNSISSSAVEMLVEHLWRCDILS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0225 643 SUPERFAMILY RNI-like 183 294 - -
Mtr1g0225 643 Gene3D Ribonuclease Inhibitor 444 643 IPR032675 -
Mtr1g0225 643 PANTHER UNCHARACTERIZED 15 634 - -
Mtr1g0225 643 SMART LRR_CC_2 505 530 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 240 265 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 372 397 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 584 609 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 188 213 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 478 503 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 214 239 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 398 423 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 558 582 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 532 557 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 452 477 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 266 291 IPR006553 -
Mtr1g0225 643 SMART LRR_CC_2 346 371 IPR006553 -
Mtr1g0225 643 Gene3D Ribonuclease Inhibitor 240 443 IPR032675 -
Mtr1g0225 643 Gene3D Ribonuclease Inhibitor 161 239 IPR032675 -
Mtr1g0225 643 Pfam Leucine Rich repeat 347 368 IPR001611 GO:0005515
Mtr1g0225 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Mtr1g0225 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Mtr1g0225 643 SUPERFAMILY F-box domain 61 102 IPR036047 GO:0005515
Mtr1g0225 643 SMART fbox_2 68 109 IPR001810 GO:0005515
Mtr1g0225 643 PANTHER EIN3-BINDING F-BOX PROTEIN 1 15 634 - -
Mtr1g0225 643 Gene3D - 58 109 - -
Mtr1g0225 643 Pfam F-box domain 66 103 IPR001810 GO:0005515
Mtr1g0225 643 SUPERFAMILY RNI-like 316 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0225 Mtr-Chr1 2543746 2547285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0225 K14515 - gmx:100820247 1050.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0225 1 2543746 2547285 Mtr1g0225 1 2543746 2547285 ECH
Mtr1g0225 1 2543746 2547285 Mtr3g3910 3 52936890 52940412 PCT