Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3899 ATGAGTGAATTGACTTCAGTATCAAACGAGAGTCCTCGGCGATCTCTGAGCATTCAACTTTCTTCCATGATTATCGTCGATTGCACTTTACCCTACGACAAACTTCCTTCCCAAAATCTCACTCTCACTGTCCTCAAATTGGATTCTTCTTCCTTCCAGGTTGAAGTTGCGAAAACCGCAACTGTTGCAGTCCTGAAGCAGGCAGTGGAGGCTGCTTTTAGACACAAACCGGAGAAAATATCCTGGCCACTTGTTTGGGGGCAGTTTTGTTTATGCTATGAAGGACAGAAGTTAGTTACAGAAACGGATTATCTTAGAGATTATGGTATCAAGGATGGTGATCAGCTTCGATTCATTCGCCATGTATCCAATGTCTGTAATTTTCAAAGAAAACCGAAGAAACGAACTGTCAATTTGAAACAACATGGGAGGTCATTGTCACAAGTGAATAGATGTCTACTGACAGAAAATGGTGATGAAGACAACATTGGTTTAGATAGTATAGTCATAGAAAGTGGGAATATCCAGGATTGCAATGCAGAAGAAAATCGCCTTGGAGTAAGCAGCAGGTTAACTGGATATTTGGGAGGGATGTTCTCAGAGGCCCGGATGGCAGTTGTGAGAAAAGCTAGATTGGAAGGTGGGATTTCCAAGGGTATAGCCAGCAGTTTTAAGAAGGTTAAAGGGATTGTAGGCCATTGCAGAAAGCCGCATCGAAGACACGCATGGACAGAGTCTCCAGGTTGA 747 0.4311 MSELTSVSNESPRRSLSIQLSSMIIVDCTLPYDKLPSQNLTLTVLKLDSSSFQVEVAKTATVAVLKQAVEAAFRHKPEKISWPLVWGQFCLCYEGQKLVTETDYLRDYGIKDGDQLRFIRHVSNVCNFQRKPKKRTVNLKQHGRSLSQVNRCLLTENGDEDNIGLDSIVIESGNIQDCNAEENRLGVSSRLTGYLGGMFSEARMAVVRKARLEGGISKGIASSFKKVKGIVGHCRKPHRRHAWTESPG* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3899 248 Gene3D - 35 127 - -
Mtr3g3899 248 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 5 240 IPR039690 GO:0000398|GO:0005689
Mtr3g3899 248 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 5 240 - -
Mtr3g3899 248 Pfam Ubiquitin-like domain 40 122 IPR040610 -
Mtr3g3899 248 CDD Ubl_SNRNP25 40 121 IPR040610 -
Mtr3g3899 248 ProSiteProfiles Ubiquitin domain profile. 40 119 IPR000626 GO:0005515
Mtr3g3899 248 SUPERFAMILY Ubiquitin-like 35 123 IPR029071 -
Mtr3g3899 248 SMART ubq_7 40 121 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3899 Mtr-Chr3 52825077 52827590 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3899 - - mtr:MTR_3g106830 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3899 3 52825077 52827590 Mtr3g3899 3 52825077 52827590 ECH
Mtr3g3899 3 52825077 52827590 Mtr1g0231 1 2590548 2594773 ECH