Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3895 ATGGCTTCCAACACCAAATTATTCTCAGCCACCATTTTAGTACTTTCTCTCCTTGCTTACTCAACATTTACTGAGGCTAAGGGTTCATGCTCACCATCACCAAAGCCAAAGCCAAAACCTTCACCCCAAGGTCACTGCCCCAAAGATACCTTAAAGTTAGGGGTTTGTGCTGATGTTTTAGGACTGGTTAATGTTGTTGTTGGAAATCCTGCTTCAGGTAGTAATTGTTGTGCAATAATCAAAGGTTTGGCTGATTTGGATGCTGCACTTTGTCTTTGCACTGCAATTAAGGCCAATGTGCTTGGAATAAACTTGAACGTACCTCTCACCCTCACCTGGATCCTTGGTGCTTGTCAAAAAACAATCCCTCCTGGTTTTCAATGTGCCTAA 390 0.4282 MASNTKLFSATILVLSLLAYSTFTEAKGSCSPSPKPKPKPSPQGHCPKDTLKLGVCADVLGLVNVVVGNPASGSNCCAIIKGLADLDAALCLCTAIKANVLGINLNVPLTLTWILGACQKTIPPGFQCA* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3895 129 SMART aai_6 46 128 IPR016140 -
Mtr3g3895 129 Gene3D - 45 129 IPR036312 -
Mtr3g3895 129 CDD HPS_like 46 128 IPR027923 -
Mtr3g3895 129 PANTHER LIPID TRANSFER PROTEIN 1 30 - -
Mtr3g3895 129 PANTHER LIPID TRANSFER PROTEIN 27 129 - -
Mtr3g3895 129 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 49 128 IPR036312 -
Mtr3g3895 129 Pfam Hydrophobic seed protein 46 129 IPR027923 -
Mtr3g3895 129 PANTHER - 1 30 - -
Mtr3g3895 129 PANTHER - 27 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3895 Mtr-Chr3 52784033 52784923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3895 44 128 Acyl Lipid Metabolism Gene Families AT4G22490 40.000 2.67e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3895 - - mtr:MTR_3g106750 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3895 3 52784033 52784923 Mtr3g3895 3 52784033 52784923 ECH
Mtr1g0235 1 2631605 2632439 Mtr3g3895 3 52784033 52784923 PCT