Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3885 ATGTCTTTCTTTTCTACTCTCCGTCGATCCTCCTTCCTCATCCAACGTTTCCAAACTTCGTCTTCACAGTTTTCTTCCTCTCCACCATCGTTACCGAATACCAACCCACGGCCACCACAATATCGAAAGTGGGTTTCAGCCTTAGTTGTTGGCTCAGCTCTTGCTTTTGTGTGTTACTTCTCCAAAACCAATTCCAGCTTCGACTCGGCTTTCTTAAACAATATCCTTAGAAAATCATCTCTTCCTGAGGGTTCCAATAATAACTTACTTTTTGGAGATTCCTACAGAAGCAAGGTTTTCTTCAACTATGAGAAGCGCATACGATTGCATAGTCCACCTGAGAAGGTTTTTGAATACTTTGCATCATATCGTACACCGGAAGGGGAAGTTCTTATGAAACCGGCAGATTTAATGCGAGCAGTTGTTCCTGTTTTCCCTCCATCTGAATCCAACCTTGTTAGAGATGGATCCTTGGAAGGCGAAAGAAGTCCTGGCCACTTGTTCTGTCCTCCTTCAGAATTTTTTCTGCTTTTCGATGTAAACGGTGACGGTCTTATATCTTTCAGAGAGTATTTATTCTTGGTAACCCTGCTTAGCATCCCAGAATCGAATTTTTCTGCAGTATTTAAGATGTTTGACATGGATAATGATGGGGAGATAGATAAAGAAGAATTCAAAAGAGTGGTGGCATCAATGCGATCTCATAGCAAGCATGGTATTCACAGAATGTATGAACAACAGACGGATGCTTCTGTAGAAAATGGTAGGATGGTGGAATACTTATTTGGTAAAGACGGAAAAGGACGCCTCAAACATGATAAATTTGTGAAGTTTATAAGAGATTTACATGATGAAATTTTGAGGCTGGAGTTTGTTCATTATGACTTCAAATTTCAAAAAACCATATTGGCCAAGGATTTCGCACACTCCATAGTTGCTTCTGCAGATGTTAATCATCTGAGCAAGTTACTTGAAAGGGTTGATGAATTGAACAATGATCCACAGTTCAATAGTGTACGCATCACATTTGAGGAGTTCAAAAACTTTGCAGAACTGCGGAAAAAATTAGTTCCACTATCATTAGCTCTATTCAGTTTTGCAAAAGTAAATGGCCTTTTAACAAGAGATGATTTTCAGCGAGCTGCATCAAGTGTTTGTGGTTTATCTCTTTCTGACAACGTGGTTGAGATTGTTTTCCATTTGTTTGACACAAGTGGGGATGGAAATCTAAGTTCAAATGAGTTTGTTAGAGTGCTACAGAGGCGTGAGAGAGATGTTGGTCGATCTGTGGAGACAGGAATCATGGGTTTCTTGTCATGCTGTTGGAACTGTACAGACAATTCCCCAGGTTCACAGTTGTTGTCCTGA 1368 0.402 MSFFSTLRRSSFLIQRFQTSSSQFSSSPPSLPNTNPRPPQYRKWVSALVVGSALAFVCYFSKTNSSFDSAFLNNILRKSSLPEGSNNNLLFGDSYRSKVFFNYEKRIRLHSPPEKVFEYFASYRTPEGEVLMKPADLMRAVVPVFPPSESNLVRDGSLEGERSPGHLFCPPSEFFLLFDVNGDGLISFREYLFLVTLLSIPESNFSAVFKMFDMDNDGEIDKEEFKRVVASMRSHSKHGIHRMYEQQTDASVENGRMVEYLFGKDGKGRLKHDKFVKFIRDLHDEILRLEFVHYDFKFQKTILAKDFAHSIVASADVNHLSKLLERVDELNNDPQFNSVRITFEEFKNFAELRKKLVPLSLALFSFAKVNGLLTRDDFQRAASSVCGLSLSDNVVEIVFHLFDTSGDGNLSSNEFVRVLQRRERDVGRSVETGIMGFLSCCWNCTDNSPGSQLLS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3885 455 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 1 455 IPR039800 GO:0005509|GO:0006851
Mtr3g3885 455 SMART efh_1 394 422 IPR002048 GO:0005509
Mtr3g3885 455 SMART efh_1 170 198 IPR002048 GO:0005509
Mtr3g3885 455 SMART efh_1 204 232 IPR002048 GO:0005509
Mtr3g3885 455 PANTHER CALCIUM-BINDING EF HAND PROTEIN 1 455 - -
Mtr3g3885 455 ProSitePatterns EF-hand calcium-binding domain. 213 225 IPR018247 -
Mtr3g3885 455 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Mtr3g3885 455 Gene3D - 111 281 - -
Mtr3g3885 455 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Mtr3g3885 455 Pfam EF hand 174 191 IPR002048 GO:0005509
Mtr3g3885 455 Pfam EF hand 207 229 IPR002048 GO:0005509
Mtr3g3885 455 SUPERFAMILY EF-hand 173 422 IPR011992 -
Mtr3g3885 455 CDD EFh_MICU 204 422 - -
Mtr3g3885 455 ProSiteProfiles EF-hand calcium-binding domain profile. 200 235 IPR002048 GO:0005509
Mtr3g3885 455 CDD EFh 173 230 IPR002048 GO:0005509
Mtr3g3885 455 Gene3D - 296 441 - -
Mtr3g3885 455 Pfam EF-hand domain pair 371 422 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3885 Mtr-Chr3 52699592 52702372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3885 43 387 EF-hand Containing Proteins AT4G32060 56.568 2.83e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3885 K22827 - gmx:100786375 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0244 1 2717837 2723732 Mtr3g3885 3 52699592 52702372 PCT