Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0244 ATGTCATTCCTTTCCACTCTCAGAAATTCCACCTCACACTTCTTCCACCATTTCTCAATCCAACGCCTCCAAATCCTTCACACTTCTTCTTCGCCGTCGCTACTCAACGCTCGCAACGGTCTTTTCGCCGCCATTATCGCCGGCACCAGTCTAGGGTATGTTCTCTACACCACCGACTTTGACTCAACTCACTTTCAATCTTCAATCTCTTCCTTCGTTGACCGTTCAACACCGAATTCACCTTCATTTCTTACGAAATTCTCCCTTCCTGAAACTTCTGGAGCCTTCCTTTTTCGAGAAGCTTATAGGAGAAAGGTCTTCTTCAATTATGAGAAGCGTATACGGTTGCGAAGTCCTCCCGAAAAGGTTTTTGAATACTTCGCATCTCATCGATCACCAGAAGGAGAAGTACTCATGATACCAGCAGACCTAATGAGAGCTGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGACGGATACTTGAGAGGAGAAAGAAGCCCTGGCCATTTACGCTGTTCTCCTTCAGAATTCTTTATGCTCTTTGATGTAAACAATGACGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTTCTCAGCATCCCAGAATCAAGCTTTTCTGTGGCATTTAAAATGTTTGACGTGGACAATAATGGGGAGATAACTAAGGAGGAATTCCAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAACACAGGGATGGACTGCGAACTGGCCTAAAGGTGAATGATTCCGTGGAAAATGGAGGGCTGTTGGAATACTTTTTTGGTAAAGACGGAAAGGGTTGCCTCCAACTTGATAAATTTGTAATTTTTTTGCAAGACTTGCATGATGAAATTCTCAGACTGGAGTTTGATCATTATGACTACAAATCTCGAAAAGCAATTTCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCCGCCGACATGAGTCATCTAGGCAAGTTGCTTGAACGGGTTGATGAACTGAATAATGAGCCATGCTTTAAGGATGTCCGCATCAGATTTGAGGATTTCAAAAACTTCGCAGAGCTACGGAAAAAGTTACTTCCATTATCATTAGCCCTTTTCAGTTTTGGAAAAGTAAATGGCCTGTTGACGAGAGATGATTTTCAGCGAGCAGCGTCACATGTTTGCGGCATATCTCTCTCGGACAACGTGGTTGAGATTGTTTTTCATTTGTTTGATACAAATCGAGACGGAAACCTAAGTACAGATGAGTTTGTCAGAGTGCTACACAAGCGAGAAAGGGACATTGGACATCCTGTGGAGACAGGAATGCTTGGTTTGCTGTCTTGCTGCTGGAACTGTAGAGAAAACATCTCATCTTCACGCTTCTTTTCCTGA 1401 0.4297 MSFLSTLRNSTSHFFHHFSIQRLQILHTSSSPSLLNARNGLFAAIIAGTSLGYVLYTTDFDSTHFQSSISSFVDRSTPNSPSFLTKFSLPETSGAFLFREAYRRKVFFNYEKRIRLRSPPEKVFEYFASHRSPEGEVLMIPADLMRAVVPVFPPSESHLVRDGYLRGERSPGHLRCSPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEITKEEFQKVMALMRSHHRQGVQHRDGLRTGLKVNDSVENGGLLEYFFGKDGKGCLQLDKFVIFLQDLHDEILRLEFDHYDYKSRKAISAKDFALSMVASADMSHLGKLLERVDELNNEPCFKDVRIRFEDFKNFAELRKKLLPLSLALFSFGKVNGLLTRDDFQRAASHVCGISLSDNVVEIVFHLFDTNRDGNLSTDEFVRVLHKRERDIGHPVETGMLGLLSCCWNCRENISSSRFFS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0244 466 CDD EFh 180 237 IPR002048 GO:0005509
Mtr1g0244 466 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Mtr1g0244 466 ProSitePatterns EF-hand calcium-binding domain. 220 232 IPR018247 -
Mtr1g0244 466 Gene3D - 325 444 - -
Mtr1g0244 466 SUPERFAMILY EF-hand 180 431 IPR011992 -
Mtr1g0244 466 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Mtr1g0244 466 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 4 466 - -
Mtr1g0244 466 Pfam EF hand 181 198 IPR002048 GO:0005509
Mtr1g0244 466 Pfam EF hand 215 238 IPR002048 GO:0005509
Mtr1g0244 466 ProSiteProfiles EF-hand calcium-binding domain profile. 207 242 IPR002048 GO:0005509
Mtr1g0244 466 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 4 466 IPR039800 GO:0005509|GO:0006851
Mtr1g0244 466 SUPERFAMILY EF-hand 272 363 IPR011992 -
Mtr1g0244 466 CDD EFh_MICU 212 433 - -
Mtr1g0244 466 SMART efh_1 405 433 IPR002048 GO:0005509
Mtr1g0244 466 SMART efh_1 177 205 IPR002048 GO:0005509
Mtr1g0244 466 SMART efh_1 211 239 IPR002048 GO:0005509
Mtr1g0244 466 Gene3D - 156 244 - -
Mtr1g0244 466 Pfam EF-hand domain pair 382 431 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0244 Mtr-Chr1 2717837 2723732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0244 43 398 EF-hand Containing Proteins AT4G32060 65.676 3.95e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0244 K22827 - gmx:100806575 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0244 1 2717837 2723732 Mtr3g3885 3 52699592 52702372 PCT