Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3870 ATGTTGTTTAAATTTGTAACAGGTCCTAGGAAGAAAAAACCAGGCACCGTCCCTGTTTATCTTAACGTCTATGATCTCACACCAATTAATGGTTATGCTTATTGGCTTGGTCTTGGTGTCTACCATTCAGGAGTTCAAGTTCATGATGTTGAATATGGTTTTGGAGCACATGAGAATGACACAACGGGGATTTTTGAAGTGCAACCCAAGAACTGTCCTGGGTTTACTTTCAGAAAATCGATTTTTATTGGTACAACGGATCTGGGTACAAATGATATTCGGGTATTCATGGAGAAACTAGCTCAAGAGTACTCTGGAAATTCGTATCATCTTATTTCCAAAAATTGCAACCATTTTTGTCATGATGTTTGTTACAAATTAACTGGAAAGTCTATTCCTCGATGGGTGAATCGACTTGCGAGACTTGGTTTATTCTGCAATTGCGTTCTTCCCCCTGGCTTAAATGAAACAAAGGTTAGGCAAGATACATCCGACAAGGTTGAAGAAAAAGAAAAGAGGAAAATCAGAAGTCAGTCCAGCAGGTGCGATGCTTCCTCTAATCCTCAAGGTTCATCAAGACATTGCTTTCCTCGATCATCTTTAATCAAAGCTTTATCAACCACAACATTAACAGTAAAGTAA 642 0.3863 MLFKFVTGPRKKKPGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHDVEYGFGAHENDTTGIFEVQPKNCPGFTFRKSIFIGTTDLGTNDIRVFMEKLAQEYSGNSYHLISKNCNHFCHDVCYKLTGKSIPRWVNRLARLGLFCNCVLPPGLNETKVRQDTSDKVEEKEKRKIRSQSSRCDASSNPQGSSRHCFPRSSLIKALSTTTLTVK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3870 213 PANTHER DESUMOYLATING ISOPEPTIDASE 2 211 IPR008580 GO:0008233
Mtr3g3870 213 MobiDBLite consensus disorder prediction 180 196 - -
Mtr3g3870 213 PANTHER THIOL PEPTIDASE FAMILY PROTEIN, PUTATIVE-RELATED 2 211 - -
Mtr3g3870 213 Pfam PPPDE putative peptidase domain 18 151 IPR008580 GO:0008233
Mtr3g3870 213 SMART DUF862_2a 17 155 IPR008580 GO:0008233
Mtr3g3870 213 MobiDBLite consensus disorder prediction 160 196 - -
Mtr3g3870 213 ProSiteProfiles PPPDE domain profile. 17 154 IPR008580 GO:0008233
Mtr3g3870 213 MobiDBLite consensus disorder prediction 160 179 - -
Mtr3g3870 213 Gene3D PPPDE domains 12 174 IPR042266 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3870 Mtr-Chr3 52522168 52524519 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3870 K22763 - gmx:100306675 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0260 1 2891829 2894636 Mtr3g3870 3 52522168 52524519 PCT