Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3741 ATGATAGACCCCTACGGTTTCGGGTGGATCACATGCACCCTCATCACCCTTGCTGCACTCTACAATTTCCTTTTCTCTCGTAAAAACCATTCAGATTCAACAACCACCGAGAACATTACAACCGCTACCGGAGAATGCAGATCTTTTAATCCCAACGGCGATGTTGATATCATCATTGTCGGTGCTGGTGTCGCCGGCTCCGCTCTCGCTTACACTCTCGGCAAGGATGGACGACGAGTACTTATTATTGAAAGAGATCTGAATGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGTTATCTCAAATTGATTGAACTGGGACTTGATGATTGTGTGGAGAAAATTGATGCTCAGAAAGTGTTTGGGTATGCTCTTTTCAAGGATGGGAAACATACGAGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATATCGCTGGAAGAAGCTTTCACAATGGGCGTTTTATTCTGAGAATGAGAGAGAAAGCTGCCTCCCTTCCCAATGTACGGTTGGAGCAAGGAACAGTCACTTCCCTGCTCGAAGAGAATGGTACAATTAAAGGTGTACAGTACAAAACGAAAGATGCTCAGGAATTTTCAGCATGTGCACCTCTTACCATTGTTTGTGATGGTTGTTTCTCAAACTTGCGCCGTTCTCTTTGTAATCCTAAGGTAGAAGTCCCCTCTTGTTTTGTTGGCTTAGTTTTAGAAAATTGTGAACTTCCATGTGCAGACCATGGTCACGTCATACTAGGAGATCCTTCACCGGTTCTGTTCTATCCCATAAGTAGTACAGAAATTCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCAAAGTATTTGAAGACAGTGGTAGCTCCACAGGTACCCCCTGAGCTTCATGCCGCTTTCATAGCTGCAGTGGACAAAGGCCACATAAGGACAATGCCAAACAGAAGCATGCCAGCCGATCCTTATCCCACCCCGGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGCCATCCCCTAACCGGGGGTGGGATGACTGTGGCATTATCTGATATAGTAGTGCTGCGAAATCTTCTGAAGCCTTTACGGGACCTGAATGATGCATCTAGCCTTTGTAAATACCTTGAATCCTTCTATACCTTGCGTAAGCCAGTGGCATCCACCATAAATACGTTGGCAGGAGCACTTTACAAGGTTTTCTGTGCATCACCTGATCCAGCAAGGAAAGAAATGCGTCAAGCTTGCTTTGATTATCTGAGTCTTGGGGGTTTATTTTCAGAAGGACCAGTCTCTTTGCTTTCAGGATTAAACCCTTGCCCCCTGAGTTTGGTTCTTCATTTCTTCGCTGTTGCGATATATGGTGTTGGTCGTTTGTTGCTACCATTTCCTTCCCCTAAACGCTTATGGATTGGAATACGATTAATCGCTAGTGCATCCGGAATCATCTTGCCCATTATTAAGGCAGAAGGAATCCGTCAAATGTTCTTCCCTGCAACTGTTCCAGCTTATTATAGAGCTCCTCCAGATGCATAA 1560 0.4519 MIDPYGFGWITCTLITLAALYNFLFSRKNHSDSTTTENITTATGECRSFNPNGDVDIIIVGAGVAGSALAYTLGKDGRRVLIIERDLNEPDRIVGELLQPGGYLKLIELGLDDCVEKIDAQKVFGYALFKDGKHTRLSYPLEKFHSDIAGRSFHNGRFILRMREKAASLPNVRLEQGTVTSLLEENGTIKGVQYKTKDAQEFSACAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLVLENCELPCADHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPPELHAAFIAAVDKGHIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDASSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPCPLSLVLHFFAVAIYGVGRLLLPFPSPKRLWIGIRLIASASGIILPIIKAEGIRQMFFPATVPAYYRAPPDA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3741 519 PANTHER SQUALENE MONOOXYGENASE 1 518 IPR040125 GO:0004506|GO:0016126
Mtr3g3741 519 Gene3D - 48 429 IPR036188 -
Mtr3g3741 519 SUPERFAMILY FAD/NAD(P)-binding domain 54 430 IPR036188 -
Mtr3g3741 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 56 78 - -
Mtr3g3741 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 205 220 - -
Mtr3g3741 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 348 - -
Mtr3g3741 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 348 364 - -
Mtr3g3741 519 Pfam Squalene epoxidase 206 478 IPR013698 GO:0004506|GO:0016021|GO:0050660
Mtr3g3741 519 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 518 - -
Mtr3g3741 519 Pfam NAD(P)-binding Rossmann-like domain 59 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3741 Mtr-Chr3 51240848 51246232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3741 17 517 Miscellaneous Gene Families AT1G58440 76.143 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3741 K00511 - gmx:100820031 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3741 3 51240848 51246232 Mtr3g3741 3 51240848 51246232 ECH
Mtr1g0424 1 4831954 4836297 Mtr3g3741 3 51240848 51246232 PCT