Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0424 ATGGATCTATACAATATCGGTTGGATTTTAAGCTCTGTTTTGAGTCTATTTGCGTTATACAATTTGATTTTCGCCGGGAAGAAGAATTATGATGTGAATGAGAAGGTAAATCAGCGTGAGGATAGCGTGACGAGTACTGATGCCGGTGAAATTAAATCGGACAAACTTAACGGTGATGCTGATGTTATCATTGTTGGAGCTGGTATTGCTGGTGCTGCTTTGGCTCATACACTTGGGAAGGATGGACGTCGAGTGCATATTATTGAAAGAGATTTGAGTGAGCCTGACAGAATTGTTGGAGAGTTGCTACAACCCGGTGGCTATCTCAAATTAGTTGAACTCGGGCTTCAAGATTGTGTGGACAATATTGATGCACAGCGAGTGTTTGGTTATGCTCTTTTTAAGGACGGGAAACATACTCGTCTCTCTTATCCCTTGGAAAAGTTTCACTCAGATGTCTCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGCGAGAGAAAGCTGCCTCACTTCCCAATGTAAATATGGAGCAAGGAACAGTCATTTCCCTACTTGAAGAGAAGGGGACAATCAAAGGTGTGCAATACAAGAATAAAGATGGTCAGGCATTGACAGCATATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGCAACCCTAAGGTAGATAATCCCTCTTGTTTTGTTGGCTTAATTTTAGAGAACTGTGAACTTCCATGTGCTAATCACGGCCATGTCATACTTGGAGATCCTTCGCCAATTCTTTTCTATCCTATAAGCAGTACAGAGATTCGTTGTCTGGTTGATGTACCTGGAACGAAGGTTCCTTCTATTTCAAACGGTGATATGACAAAGTATCTAAAGACGACAGTTGCTCCACAGGTCCCCCCTGAGCTTTATGATGCATTCATAGCCGCAGTGGACAAAGGCAACATAAGGACAATGCCAAACAGAAGTATGCCAGCAGATCCTCGTCCTACTCCTGGAGCCGTACTGATGGGAGATGCATTCAACATGCGTCATCCACTAACAGGGGGCGGAATGACCGTAGCATTGTCTGACATTGTGGTGTTGAGAAATCTTCTCAAGCCTATGCGTGACCTGAACGATGCACCTACACTTTGCAAATACCTCGAATCCTTTTATACCTTGCGGAAGCCTGTGGCATCCACCATAAATACATTGGCAGGAGCCCTTTACAAGGTTTTCAGTGCATCCCCCGATGAAGCAAGGAAGGAAATGCGCCAAGCTTGTTTTGATTATCTCAGCCTTGGAGGCTTATTCTCAGAAGGACCGATCTCTTTACTTTCAGGATTAAACCCTCGGCCCTTAAGCTTGGTTCTCCATTTCTTTGCTGTCGCGGTATTTGGTGTTGGCCGTTTACTATTACCATTTCCTTCACCTAAGCGGGTGTGGATTGGAGCTCGATTACTCTCTGGTGCATCTGGAATCATTTTACCCATAATTAAGGCCGAAGGAATTCGGCAGATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAGCTCCCCCGGTAAATGCATTTTGA 1581 0.4434 MDLYNIGWILSSVLSLFALYNLIFAGKKNYDVNEKVNQREDSVTSTDAGEIKSDKLNGDADVIIVGAGIAGAALAHTLGKDGRRVHIIERDLSEPDRIVGELLQPGGYLKLVELGLQDCVDNIDAQRVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVNMEQGTVISLLEEKGTIKGVQYKNKDGQALTAYAPLTIVCDGCFSNLRRSLCNPKVDNPSCFVGLILENCELPCANHGHVILGDPSPILFYPISSTEIRCLVDVPGTKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPMRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFSASPDEARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRVWIGARLLSGASGIILPIIKAEGIRQMFFPATVPAYYRAPPVNAF* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0424 526 Gene3D - 48 415 IPR036188 -
Mtr1g0424 526 SUPERFAMILY FAD/NAD(P)-binding domain 60 434 IPR036188 -
Mtr1g0424 526 PANTHER SQUALENE MONOOXYGENASE 1 524 IPR040125 GO:0004506|GO:0016126
Mtr1g0424 526 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016021|GO:0050660
Mtr1g0424 526 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Mtr1g0424 526 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 524 - -
Mtr1g0424 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Mtr1g0424 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Mtr1g0424 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Mtr1g0424 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0424 Mtr-Chr1 4831954 4836297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0424 18 523 Miscellaneous Gene Families AT1G58440 76.078 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0424 K00511 - gmx:100804406 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0424 1 4831954 4836297 Mtr1g0424 1 4831954 4836297 ECH
Mtr1g0424 1 4831954 4836297 Mtr3g3741 3 51240848 51246232 PCT