Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3417 ATGAACTTTCCAACTCCAACTCATGCCACGTCATCGCCTTCTACTTCTTCTTCCTCCTATACACTCAACCACGCTTCTCCTAATTTCAACCGTCCTCCGCTGTCGCCACAGGCAATCTGTACCTCTCAAAAAAAGTCCTTATGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACTCTAATCCTGTGAAAAATTACATAGCAGCTAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCCTGGTTTCCAAACAATCACTCAAAAAGCGCATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCTGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCTGAAGACTTGAAGAAATCTCTTTTGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAACACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTACACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGCGTTCCTGCTCTAGGATGTGAACCCTCGTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCATATGCTGGTGCCATGGCAGTTTCAAGCCTTGAAGCTCGACAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAGTGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTGCTTTTGTTTTTTGAAGTCACGACACCTGATAGTGTTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA 1587 0.4266 MNFPTPTHATSSPSTSSSSYTLNHASPNFNRPPLSPQAICTSQKKSLCSGAHVEASVNSNPVKNYIAASFSSLRSEAKPLVSKQSLKKRMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLLEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPYAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSVFHQWGILSPSLR* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3417 528 Gene3D - 276 419 - -
Mtr3g3417 528 Hamap Coproporphyrin III ferrochelatase [cpfC]. 113 438 IPR001015 GO:0004325|GO:0006783
Mtr3g3417 528 CDD Ferrochelatase_C 283 421 IPR033644 -
Mtr3g3417 528 MobiDBLite consensus disorder prediction 1 28 - -
Mtr3g3417 528 SUPERFAMILY Chlorophyll a-b binding protein 482 522 - -
Mtr3g3417 528 CDD Ferrochelatase_N 115 277 IPR033659 -
Mtr3g3417 528 ProSitePatterns Ferrochelatase signature. 304 325 IPR019772 GO:0004325|GO:0006783
Mtr3g3417 528 Pfam Ferrochelatase 114 437 IPR001015 GO:0004325|GO:0006783
Mtr3g3417 528 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 51 449 - -
Mtr3g3417 528 PANTHER FERROCHELATASE 51 449 IPR001015 GO:0004325|GO:0006783
Mtr3g3417 528 SUPERFAMILY Chelatase 113 443 - -
Mtr3g3417 528 Gene3D - 114 437 - -
Mtr3g3417 528 TIGRFAM hemH: ferrochelatase 111 438 IPR001015 GO:0004325|GO:0006783
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3417 Mtr-Chr3 48064278 48069404 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3417 K01772 - gmx:100785669 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3417 3 48064278 48069404 Mtr3g3417 3 48064278 48069404 ECH
Mtr8g3347 8 44002969 44009300 Mtr3g3417 3 48064278 48069404 PCT