Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3001 ATGTTGTTTATGAATATGTCTATTCTATCTAGCACTGATTTGCATCGTATTTTTGAGAAGCTAGATACAAATTGTGATGGTTTTGTGAGCCTTGAGGAGCTAAACTCTGTGCTCCAAAGAATATGCAATACTAGTTCACAATTTAGCTTAGAAGAACTTGAATCTCTTGTAGAAAAGAAGAGCCTAGACTTCAATGAATTCTTGTTCTTTTACAACTCTATATCAAAGGAGAAGAATGAAGAGAATAGAGGAGGTGATGAAGATGAGAATGATGAGTTGGAGAGGGATCTTGTGAAGACTTTCAAAGTGTTTGATTTGGATGGAGATGGATTCATTACAAGCCAAGAGCTTGAGTGTGTGTTGAAGAGACTTGGATTCTTGGATGAAAGTAGTGGGAAGGATTGTAGAAGTATGATTCGGTTTTATGATACTAATTTGGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGATTACAAGTGTATGA 495 0.3576 MLFMNMSILSSTDLHRIFEKLDTNCDGFVSLEELNSVLQRICNTSSQFSLEELESLVEKKSLDFNEFLFFYNSISKEKNEENRGGDEDENDELERDLVKTFKVFDLDGDGFITSQELECVLKRLGFLDESSGKDCRSMIRFYDTNLDGRLDFQEFKNMMLITSV* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3001 164 ProSiteProfiles EF-hand calcium-binding domain profile. 130 164 IPR002048 GO:0005509
Mtr3g3001 164 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Mtr3g3001 164 Coils Coil 76 96 - -
Mtr3g3001 164 Pfam EF-hand domain pair 97 159 IPR002048 GO:0005509
Mtr3g3001 164 SMART efh_1 134 162 IPR002048 GO:0005509
Mtr3g3001 164 SMART efh_1 96 124 IPR002048 GO:0005509
Mtr3g3001 164 SMART efh_1 13 41 IPR002048 GO:0005509
Mtr3g3001 164 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Mtr3g3001 164 CDD EFh 96 159 IPR002048 GO:0005509
Mtr3g3001 164 Gene3D - 1 71 - -
Mtr3g3001 164 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 6 162 - -
Mtr3g3001 164 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Mtr3g3001 164 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 162 - -
Mtr3g3001 164 Gene3D - 86 163 - -
Mtr3g3001 164 Pfam EF hand 17 37 IPR002048 GO:0005509
Mtr3g3001 164 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Mtr3g3001 164 SUPERFAMILY EF-hand 13 160 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3001 Mtr-Chr3 43842534 43843407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3001 4 160 EF-hand Containing Proteins AT1G21550 43.038 1.75e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3001 K13448 - gmx:100527117 198.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3001 3 43842534 43843407 Mtr3g3001 3 43842534 43843407 ECH
Mtr1g0928 1 10667053 10667936 Mtr3g3001 3 43842534 43843407 PCT