Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g0928 ATGAGTATTTATACATGTGCATCTGTGGAGAATCTTGCCAATATGTGTCCCCTAACCACCAATGAATTGGAGCTGATTTTTGAGAAACTAGACATAAATAGTGATGGAATTTTAACCCTTGAAGAGCTGAATCAATTGTTAGTGAGAACGGGTTTCAAGTATAGCATAGAGGAGCTTGAATATCTAGTGGGAAAGAAGAGTCTAAACTTGAGTGAGTTCTTGTGCTTTTATGACTCCATATTGAATCACAAAAATGGTGATGGTGGTGATGCTGAGATTGAAGAGTTAGAAAGTGATCTTTTGAAGACTTTCAAGGTGTTTGATTTAGATGGAGATGGATTCATCACTAGTCAAGAGCTGGAATGTGTGTTGAAGAGACTTGGCATGTGGGATGAAGAAAAGGATTGTAGATCAATGATTTACTCATATGATATTAATTTAGATGGCAAGCTTGATTTCAAGGAATTTAAGAACATGATGTTGCTTACACTACAAAGTGTTTAG 504 0.3611 MSIYTCASVENLANMCPLTTNELELIFEKLDINSDGILTLEELNQLLVRTGFKYSIEELEYLVGKKSLNLSEFLCFYDSILNHKNGDGGDAEIEELESDLLKTFKVFDLDGDGFITSQELECVLKRLGMWDEEKDCRSMIYSYDINLDGKLDFKEFKNMMLLTLQSV* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g0928 167 Gene3D - 90 166 - -
Mtr1g0928 167 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Mtr1g0928 167 Gene3D - 19 82 - -
Mtr1g0928 167 Pfam EF-hand domain pair 99 160 IPR002048 GO:0005509
Mtr1g0928 167 ProSiteProfiles EF-hand calcium-binding domain profile. 131 166 IPR002048 GO:0005509
Mtr1g0928 167 ProSitePatterns EF-hand calcium-binding domain. 31 43 IPR018247 -
Mtr1g0928 167 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 17 163 - -
Mtr1g0928 167 SMART efh_1 22 50 IPR002048 GO:0005509
Mtr1g0928 167 SMART efh_1 99 127 IPR002048 GO:0005509
Mtr1g0928 167 SMART efh_1 135 163 IPR002048 GO:0005509
Mtr1g0928 167 Pfam EF hand 26 46 IPR002048 GO:0005509
Mtr1g0928 167 ProSiteProfiles EF-hand calcium-binding domain profile. 18 53 IPR002048 GO:0005509
Mtr1g0928 167 SUPERFAMILY EF-hand 21 162 IPR011992 -
Mtr1g0928 167 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Mtr1g0928 167 CDD EFh 99 160 IPR002048 GO:0005509
Mtr1g0928 167 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 17 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g0928 Mtr-Chr1 10667053 10667936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g0928 18 161 EF-hand Containing Proteins AT1G21550 45.270 1.19e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g0928 K13448 - gmx:100779760 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0928 1 10667053 10667936 Mtr3g3001 3 43842534 43843407 PCT