Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2937 ATGTCATCAAACTCAAAATACCCGATTCTGGACGATAAGCCTATTGATAAGTGGAAGGTTACAGAGCTGAAAGAGGAACTGAAAAGAAGGAAGTTGGTTACCAAAGGTTTGAAGGAAGATTTAATTAATCGTTTGGACGAAGCCCTTCGCGAGGAAAGGGAGGCTGCTGAGGCTGCCCGCAAAAAGGAACAGGAGGCTGCCGAGGCTTCCCCCGAACAGGAGGCAGCCGAGGGTTCGAAGAAGGACGAGGCTAACGGTTTGGACACTCAAGTTGATGAGTTAAAAGATTCCAAGACTATTAATGTGGACGCTGAAGTGTTTGGTACAATTCAAGCTTCTGAACAGGGGAATAGTGGTGTAGTTGAACCATTTGAAACTGATAATGTAGCGAAGGTTCCAGAGGTTTTGGATAATGACGGTATTAAGAATGTTGACGAGGATGGTGTCACTGACCCAGTTGACGCTAATAATAGTGTGTCAGCAATGGATGTAGAAGGTGAACATGTGGAATCTGCTAACGCGGGAGAGGAGGCTGTTGCCCATCCTTCTAATGTGGAGACCACTGTTACGATAACTGAGACTGTCGTCACCAAGACTGTATCAACAGAAGTAGTAGTCGATGGTCAGGATTCTTATAGTTCTGAGAAGAATAATGAGGATTCGGCAATCAAGCTAGGGAATGAGGAATCAAAGGTGCAGCTGGACAGTGAGGACTCAAAGCCCCAACTGGAGTCTGACACAAAGCCTCCATGTGACAATCTCATGCCCAACTCTTCCGCTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTATAATAGGGACTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATGTCAAATTAGAACAAGATAATGTTAGGCAAGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTATGATGAATCGCATTCAGTGGATGTTGGAGGGCTGCATGAAAAAAAGTCATCTGTTGAAGCAAATAACAACAATGTTACGAGTCCAGAGTTGAACAAAACCAATAGTAGTGATGATGTAGGTTATTCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGACTTGCCTGAGATTAGGCAATATGATTCTAAGTTTAATGATGAACTTAGTGACAAAGTTGAGAATAATGAAGTCCTTAAGGGGAAGGAGCAAAGCAAAACAATAGTTGTGGGTGATGGCGTATCCGCAAGAAACAGTGATACCCACCAAGATATGAACATTAGTACTGTTTCCTTGACTGAGAAGCGAAAATATCCTGAACAAACATTAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGATGGAACACTGAGGCAGTTAAAGGAGCAGATCTGCAAAGCACTACTCCCAGATCTGCTACTACACCCAAGGACGGGCAAATTACTCTGAAGCGCAACTTATCTAGGTCTAATTCATCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCATCTCGAAGAGCCCCAACAAATTCCCTCAGGATTGATCAATTCCTTCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGGAAAACTGGGAGCGTCAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCGTCCACTGAAGAGGCCATTGAAACACGAAATGCTGTGTATAACTTGCAATGGCCTACAAATGGTGGGCGGCTCTTAATTGCCGAGTTTGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAAGCTCCTCCCACTCCAACTGCTGCTGTCAACAGTGCTCCAATAGTTCCTCCCGCACCACCCTCTTCACAGCCGGAGCCTTCCCCTCGTCAGCACAGGGAACAACATCTTCCAGTTACTCTCCCACCTCCACCACCATTGGTAAGGCCCCCACCAGTTGCTAGGGAACACCTTCCATCGCCACCGCCCCTTCCCGAGAAAGTGGACCCACCTATTGTCACTCTAGATGATCTCTTCCGTAAAACCACTGCAACTCCTCGGATCTATTATTTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCGGCACAGGGTAAGAGTACAAGGCAGTAG 2163 0.4443 MSSNSKYPILDDKPIDKWKVTELKEELKRRKLVTKGLKEDLINRLDEALREEREAAEAARKKEQEAAEASPEQEAAEGSKKDEANGLDTQVDELKDSKTINVDAEVFGTIQASEQGNSGVVEPFETDNVAKVPEVLDNDGIKNVDEDGVTDPVDANNSVSAMDVEGEHVESANAGEEAVAHPSNVETTVTITETVVTKTVSTEVVVDGQDSYSSEKNNEDSAIKLGNEESKVQLDSEDSKPQLESDTKPPCDNLMPNSSAPENQVSEVNPSIIGTQVKSDSFSTDSVSINQKNELKDTIIANNVKLEQDNVRQEMVEEPSSRNDVPVYDESHSVDVGGLHEKKSSVEANNNNVTSPELNKTNSSDDVGYSEKLNLDRSSGDDSMEEDLPEIRQYDSKFNDELSDKVENNEVLKGKEQSKTIVVGDGVSARNSDTHQDMNISTVSLTEKRKYPEQTLVGNNEPAKRQRRWNTEAVKGADLQSTTPRSATTPKDGQITLKRNLSRSNSSATDDTPKERIVPPSRRAPTNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSTEEAIETRNAVYNLQWPTNGGRLLIAEFVDPEEVKMKLEAPPTPTAAVNSAPIVPPAPPSSQPEPSPRQHREQHLPVTLPPPPPLVRPPPVAREHLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSTRQ* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2937 720 MobiDBLite consensus disorder prediction 344 369 - -
Mtr3g2937 720 Pfam SAP domain 16 49 IPR003034 -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 647 678 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 451 524 - -
Mtr3g2937 720 SUPERFAMILY RNA-binding domain, RBD 520 608 IPR035979 GO:0003676
Mtr3g2937 720 SMART sap_9 15 49 IPR003034 -
Mtr3g2937 720 Coils Coil 38 69 - -
Mtr3g2937 720 Pfam RNSP1-SAP18 binding (RSB) motif 676 716 IPR032552 -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 475 512 - -
Mtr3g2937 720 SUPERFAMILY SAP domain 15 52 IPR036361 -
Mtr3g2937 720 Gene3D SAP domain 2 65 IPR036361 -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 135 186 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 251 309 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 208 387 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 619 636 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 52 96 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 370 387 - -
Mtr3g2937 720 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 718 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 221 245 - -
Mtr3g2937 720 ProSiteProfiles SAP motif profile. 15 49 IPR003034 -
Mtr3g2937 720 CDD RRM_ACINU 526 610 IPR034257 -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 613 680 - -
Mtr3g2937 720 MobiDBLite consensus disorder prediction 310 342 - -
Mtr3g2937 720 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2937 Mtr-Chr3 43250869 43254795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2937 K12875 - gmx:100786288 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2937 3 43250869 43254795 Mtr3g2937 3 43250869 43254795 ECH
Mtr8g3174 8 42298046 42303140 Mtr3g2937 3 43250869 43254795 ECH