Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2853 ATGGCAGCAACCATGGCAATGATGATCAACACAAAGTGCCTAAACACAGGCCTACCAAAGTTGCAAAACCTTAGCACCACTACTAAGCTAACATCAACATGCAAAACCACCACCATGCAGAACCTACCAAAGGGTCTTGTCTCAACCAAGAACACCAACTTTGTGTCACCTTCACTTGCGATTGCAGGAGCAATATTTTCATCCCTTGCAACCTCCGATGCGGCTTTCGCAGCTCAACAAATAGCAGAAATAGCAGAAGGTGATAACAGAGGAACACTTCTGCTGTTTGTTGTTGCACCAGCTATAGGTTGGGTTTTGTTCAACATATTGCAACCAGCTTTGAACCAAATCAACCGTATGCGTAACGCAAAGGGTGTGATTGTTGGGCTTGGACTTGGACTTGGTGGACTTGCAGCTTCAGGTATGGTGTCAGAAGCATCTGCTAGTGAGATTGGTTTGATTGCTGATGCTGCTGCTGGAAGTGACAACAGGGGAACACTTCTGTTGTTTGTTGTTGCACCAGCTATCCTTTGGGTGCTGTACAATATTTTGCAGCCTGCTCTCAACCAGATCAACAGGATGAGATCAGATTAA 594 0.4545 MAATMAMMINTKCLNTGLPKLQNLSTTTKLTSTCKTTTMQNLPKGLVSTKNTNFVSPSLAIAGAIFSSLATSDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRNAKGVIVGLGLGLGGLAASGMVSEASASEIGLIADAAAGSDNRGTLLLFVVAPAILWVLYNILQPALNQINRMRSD* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2853 197 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 196 IPR038760 GO:0009523
Mtr3g2853 197 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 196 - -
Mtr3g2853 197 Pfam Photosystem II protein Y (PsbY) 162 194 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Mtr3g2853 197 Pfam Photosystem II protein Y (PsbY) 88 120 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2853 Mtr-Chr3 42464238 42465137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2853 K02723 - zju:107428525 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3072 8 41354267 41355093 Mtr3g2853 3 42464238 42465137 PCT