Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2845 ATGGCAATGATGCCGTACTACCTTTCGAGGTTACCTTATCAGGATTCTCTTCAAATACTTGAGGCTGATATTCAACAAGCTAATTCTTTGGCTGCTGCAATTCCAAGAGCAAGAGGAGGGACTCTTATTAAAATGAAATTGGTTTGCAATCAATTGGCTCCACTATTACTATTATTTCTTCAATGGATGGATTGTTCTTGTGCTGCCTTTTTGCATAGTTATCTAAATCTTTTCCACATACTTATATATAAGGAACCAAATGATGGTAGATCAAACATGTCTACTCGTGGAAGGAAGGCAACCATTAAGGACTTTTATGCCGTTATATTGCCATCTCTTCAGCGGCTTCATGGTAGTTTCGACGACACGATGGAGACTTGTGAAGAAGGGAACACAAGTTTAGAAGGTTCAAGTTGTGGCAATAAAGTAATCGAATTTGAAGGAGATGGGAAATTAACCAATGTTGATTTGCAAAGAGAAGATGAGTGTGGGATTTGCTTAGAGCCTTGTACCAAAATGGTTTTGCCTAATTGCTGCCACGCCATGTGCATCAAATGCTACCGCAAGTGGAACAGAAAGTCAGAGTCGTGTCCTTTTTGTCGCGGTAGCTTAAGGAGGGTTAATTCGGAGGATCTATGGGTATTAACTTGTGATGAAGATGTTGTTGATGCCGAAACAGTTTCTAAAGAGGATTTGTTGCGTTTTTACCTCTATATCAACAAGCTTCCCAAAGATAACCCTGATGCACTTTTCCTAATGTATTATGAATACCTGATTTAA 780 0.3923 MAMMPYYLSRLPYQDSLQILEADIQQANSLAAAIPRARGGTLIKMKLVCNQLAPLLLLFLQWMDCSCAAFLHSYLNLFHILIYKEPNDGRSNMSTRGRKATIKDFYAVILPSLQRLHGSFDDTMETCEEGNTSLEGSSCGNKVIEFEGDGKLTNVDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDEDVVDAETVSKEDLLRFYLYINKLPKDNPDALFLMYYEYLI* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2845 259 PANTHER RING FINGER PROTEIN 41, 151 6 259 - -
Mtr3g2845 259 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Mtr3g2845 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 212 IPR013083 -
Mtr3g2845 259 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 259 - -
Mtr3g2845 259 SUPERFAMILY RING/U-box 154 205 - -
Mtr3g2845 259 SMART ring_2 163 200 IPR001841 -
Mtr3g2845 259 Pfam Ring finger domain 161 201 IPR001841 -
Mtr3g2845 259 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2845 Mtr-Chr3 42421940 42424156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2845 - - mtr:MTR_3g086130 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2845 3 42421940 42424156 Mtr3g2845 3 42421940 42424156 ECH
Mtr3g2845 3 42421940 42424156 Mtr8g2767 8 38338396 38340955 PCT