Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2462 ATGGAATTCGCTCAACAACAAGAGCAATGGGATCATGGTGCCAGCATCGGTGAAGACTCCTCCACCGTTTCCGACTGCGAAAGCGGTGTTTCCGCCACCACCACTGGCGAAGAACAAAGACAACGACGACAAAATTCTGATTCGTTTTTAGTTTGGTTAGGAGAAGGTGACTCTGTTTATGACCTACTAAAGACGAGGTTCCTTCATGGCTTGGGCGCTCTTTCGAGCAAAGCTGAGATTCTTGCTATTCAAAGAAACGCATGTTCTGACGCCGTTTCACAGGCGCGGCTTCGATCCTTTCTTGTTTATGCAGAAGCTGTTTCCAAACTTCGCGGTGGAGATTCGAATGTGAAATATGCTTGGTATGGGAGTTCTGGTGAGAATGACGTTAGAGGCATTCTATCAAACGGGTTCAGTCATGTCCATGGGAATAGCATCTGCCTCTCTCCAGATGATTCTCCTCTCCAAAGTGTAAAAAGTTGTGCTGTTGGAAGAGATGGCGTCAGGCATTTGATACTGTGCAGGGTTATTTTGGGAAGAACTGAGATTGTGCAAGCTGACACAAAACAATGTTATCCAAGTTGTGCGGATTATGATTCTGGGGTTGATAGTTTTTCAGCTCCAACTAAGTACATGATTTGGAGTAGTAGAATGAATACTCATGTTTGGCCTGCATATGTTTTAAGCTTCAAGGTTTCTTCTTTGAAAGCGGTTGAGATTGAAGGATATGGGAGACCAACTTCACCTTCGGTGCCTTTTCCGACTTTGATTTCTATGCTTTCCAAGGTTTCGCCGCAACTTGATATTGCCCTGATTTGCAAGTTCTATAAAGCTAGAAAGGAAAAGAAGATTTCCCGACATGAATTGATAGAAAAAGTGAGACAAATTGCAGGAGACAAGTTGCTGTTTTCAATCATTAAGTATTATAGAGCCAAGAAAAAACCTACAAGTTTTCAGCAAGCAAGGTCAAAGAATGGCAACTAG 984 0.4309 MEFAQQQEQWDHGASIGEDSSTVSDCESGVSATTTGEEQRQRRQNSDSFLVWLGEGDSVYDLLKTRFLHGLGALSSKAEILAIQRNACSDAVSQARLRSFLVYAEAVSKLRGGDSNVKYAWYGSSGENDVRGILSNGFSHVHGNSICLSPDDSPLQSVKSCAVGRDGVRHLILCRVILGRTEIVQADTKQCYPSCADYDSGVDSFSAPTKYMIWSSRMNTHVWPAYVLSFKVSSLKAVEIEGYGRPTSPSVPFPTLISMLSKVSPQLDIALICKFYKARKEKKISRHELIEKVRQIAGDKLLFSIIKYYRAKKKPTSFQQARSKNGN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2462 327 Pfam RCD1-SRO-TAF4 (RST) plant domain 245 310 IPR022003 -
Mtr3g2462 327 ProSiteProfiles RST domain profile. 244 315 IPR022003 -
Mtr3g2462 327 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4 11 318 - -
Mtr3g2462 327 ProSiteProfiles PARP catalytic domain profile. 37 251 IPR012317 GO:0003950
Mtr3g2462 327 MobiDBLite consensus disorder prediction 1 42 - -
Mtr3g2462 327 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 11 318 IPR044964 -
Mtr3g2462 327 SUPERFAMILY ADP-ribosylation 50 231 - -
Mtr3g2462 327 MobiDBLite consensus disorder prediction 1 39 - -
Mtr3g2462 327 Gene3D - 49 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2462 Mtr-Chr3 38547266 38550801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2462 - - pvu:PHAVU_009G178500g 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3812 4 51868944 51872783 Mtr3g2462 3 38547266 38550801 PCT