Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2439 ATGAAGGCAACATTGAGATACTTAGCAGGAATTGCAGGGCCTAGTGGTTTTGGTTCAAATTCAACAGCAGAACAAGTTACTCAAAATTGCTCTTCTTTCCTTCCTTCCGGTCTAACCGCTCTAATCACTGGTGGAACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGAATTGTGATTGGTGCAAGGGACTTGAAGAAGGCAATGAAAGTGAGAGACAATATACAAAAAGAGAGTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTTGTTCTGTACAAAGATTTTGTTCTGATTTTTTAGCTTTAGATCTTCCACTTAATATTCTAATAAACAATGCTGGTGTATTCTCTCAAGATTTGGAGTTCTCTGCTGAGAAAATTGAGATGACATTTGCCACAAATTACTTAGGACATTTTTTGCTAACAGAAATGTTATTGGACAAAATGATAGAAACGTCCAAGAAGACAGATATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAGACATGGTTTTTGTTTCAAAGATATACTCAATGGAAAAAACTATAATGGAACACGTGCTTATGCTCAATCAAAATTGGCCAATATTTTGCATGCTAAAGAAATAGCTAGACAACTCAAGGCAAGGAAAGCAAGAGTAACTATGAATGCAGTTCATCCAGGTATTGTAAAGACAGGAATTATTAAATCTCACAAGGGGTTAATAACAGATTCCTTATTTTTCATAGCATCAAAGTTACTGAAATCGACATCACAGGGTGCAGCAACTACATGTTATGTGGCTTTGAGTCCAAAAACAGAAGGGGTGAGTGGGAAATACTTCACAGATTGTAACGAGAGTAAGTGTTCTCGCTTAGCAAATGAAGAATCAGAAGCTCAAAAGTTATGGAACAATACTCATGCCTTGATACACAAACGACTCCACCAAGCAACAAACAATATGTAG 999 0.3704 MKATLRYLAGIAGPSGFGSNSTAEQVTQNCSSFLPSGLTALITGGTSGIGAETARVLAKRGVRIVIGARDLKKAMKVRDNIQKESPNAEVILLEIDLSSFCSVQRFCSDFLALDLPLNILINNAGVFSQDLEFSAEKIEMTFATNYLGHFLLTEMLLDKMIETSKKTDIQGRIINVSSVIHSWVKRHGFCFKDILNGKNYNGTRAYAQSKLANILHAKEIARQLKARKARVTMNAVHPGIVKTGIIKSHKGLITDSLFFIASKLLKSTSQGAATTCYVALSPKTEGVSGKYFTDCNESKCSRLANEESEAQKLWNNTHALIHKRLHQATNNM* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2439 332 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 326 - -
Mtr3g2439 332 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Mtr3g2439 332 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Mtr3g2439 332 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Mtr3g2439 332 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Mtr3g2439 332 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Mtr3g2439 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 299 IPR036291 -
Mtr3g2439 332 CDD retinol-DH_like_SDR_c_like 37 314 - -
Mtr3g2439 332 Pfam short chain dehydrogenase 39 180 IPR002347 -
Mtr3g2439 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Mtr3g2439 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Mtr3g2439 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Mtr3g2439 332 PANTHER RETINOL DEHYDROGENASE 4 326 - -
Mtr3g2439 332 Gene3D - 28 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2439 Mtr-Chr3 38236910 38240110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2439 39 258 Acyl Lipid Metabolism Gene Families AT3G46170 28.000 1.20e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2439 - K11153 gmx:100819058 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2439 3 38236910 38240110 Mtr3g2439 3 38236910 38240110 ECH
Mtr4g3786 4 51662099 51665467 Mtr3g2439 3 38236910 38240110 PCT