Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2317 ATGAGTGAGAATCTGAAGAAAACTGCCTCTGATGGCCATGAGAAAATGTTAGCAGTGTCACTATCACAAGAACAGCAGGCTAAGATCATTGAGGTGAGAAAGTTGATAGGAACATTATCAGATAAGGAATCTGTGTACTGTTCTGATGCATCCATTTCAAGGTATTTAAAATCACAAAATTGGAATGTTAAGAAAGCATCTCAAATGTTGAAACAAAGCCTGAAATGGAGACAGGAATATAAACCTGAAGAGATTACCTGGGATGATGTTGCTAAGGAAGCAGAGACAGGGAAAATGTATAGGCCAAATTATTGTGCAAAGGATGGAAGACCAGTACTTATAATGAGAACAAATCGCCAGAAGTCAAAGACATTGGTAGAAGAGATTAAGCATTTTGTTTACTGCATGGAGAATGCAATTTTAAATCTTCCACCTAACCAGGAGCAGGTGATCTGGCTGGTTGATTTCCATGGTTTCAGTTTGTCAAGTGTATCATTCAAGATGACGCGCGAAGTTAGCCATATATTACAAAAATATTATCCGCAGCGCCTAGGATTGGCAATCATGTATGATGCACCTGGGATTTTCCAACCATTCTTCTCGATGGTGAAGGTTCTGCTTGAGACTGAGAGTTACAATAAGATAAAGTTTGTTTATTCTAACGACCAAAATACAAAGAAGACTATGGAGGGTTTGTTTGATATGGATCAACTAGAACCTGCATTTGGTGGGAATAATGCCACAGAATTTGATATGAATAAATATGCTAAGAGAATGAGAGAGGAAGATAACAAGATGCACTCCTTATGGACACAGGCAAACTCTCCATTGTCAGTCTCGCACAATGTTCCTCCTTCAGATTCGATCAGGTTAGAAGTAGATTCTGATGCTTCCAACGAGAAAATAATTGATTCCTCTGTTCCTAAACCTGATCAATATATCTCGGTTACTCGTGGGGACACAAATGTCATGGCATAG 978 0.3885 MSENLKKTASDGHEKMLAVSLSQEQQAKIIEVRKLIGTLSDKESVYCSDASISRYLKSQNWNVKKASQMLKQSLKWRQEYKPEEITWDDVAKEAETGKMYRPNYCAKDGRPVLIMRTNRQKSKTLVEEIKHFVYCMENAILNLPPNQEQVIWLVDFHGFSLSSVSFKMTREVSHILQKYYPQRLGLAIMYDAPGIFQPFFSMVKVLLETESYNKIKFVYSNDQNTKKTMEGLFDMDQLEPAFGGNNATEFDMNKYAKRMREEDNKMHSLWTQANSPLSVSHNVPPSDSIRLEVDSDASNEKIIDSSVPKPDQYISVTRGDTNVMA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2317 325 Gene3D - 2 284 IPR036865 -
Mtr3g2317 325 MobiDBLite consensus disorder prediction 302 325 - -
Mtr3g2317 325 PANTHER GH16843P 1 309 - -
Mtr3g2317 325 SMART sec14_4 93 247 IPR001251 -
Mtr3g2317 325 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 309 - -
Mtr3g2317 325 CDD SEC14 107 245 IPR001251 -
Mtr3g2317 325 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 87 250 IPR001251 -
Mtr3g2317 325 SUPERFAMILY CRAL/TRIO N-terminal domain 20 89 IPR036273 -
Mtr3g2317 325 MobiDBLite consensus disorder prediction 310 325 - -
Mtr3g2317 325 Pfam CRAL/TRIO domain 96 244 IPR001251 -
Mtr3g2317 325 SUPERFAMILY CRAL/TRIO domain 87 265 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2317 Mtr-Chr3 36902025 36904134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2317 51 215 Acyl Lipid Metabolism Gene Families AT5G47730 23.077 4.02e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2317 - - cam:105852179 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2317 3 36902025 36904134 Mtr3g2317 3 36902025 36904134 ECH
Mtr5g2127 5 27424482 27428960 Mtr3g2317 3 36902025 36904134 PCT