Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2158 ATGAAAAAAAAGTTCATCAAGTTGTTAAGTTTTTTGACCAACAAGGGTAAAGTGAATAAGGAAGAACCACCTTTAGATCTTAAGGAAGCTTTTTCCAAGTTTGCAAATGGTGAGAATCACATGTCAAAGGAACAACTACTTAGATTCATGGTGGAGTATCAAGGAGAACAAAATTGCACCTTATTGGATTTGGAGCCAATCATTGAAAAGGTTTTGAAAATGGAAAGTTCTAACACTGAAACTAGCAGTATTGCAGGACTCAATTTGGATGACTTCTTAGATTTTCTGCTTCTAGATGATTTCAATGGTCCTTTAAAAGATGAGGTACATCATGATATGAAAGCTCCTTTGTCACATTATTTCATGTATACAGGACACAATTCCTACCTTACTGGAAATCAATTTACCAGTGAGAGCAGTGATAAACCAATTATAGAGGCATTGAAACAAGGTGTACGAGTAATTGAACTTGATTTATGGCCATCTTCAACTAAAGATGGTGGCATTAAAGTAGTTCATGGAAAGACTCTCACCACTCCAGTTGCACTAACCAAATGTTTGGAAGCCATAAAAGAATATGCTTTTGTCAAATCTGATTTTCCAGTGATTCTAACTTTAGAAGATCACCTAACACCAAAGCTTCAGGATAACTTTGCAAAAATGGCAAATCAAATATTTGGAGAAATGCTTTATTGTCCTACGACAGATTGTATAACAGAATTTCCCTCACCAGCATCACTAAAAAATATGGTACTTATATCAACTAAACCACCAAAGGAGTTTCCTCAAACTGATTGTGCTAACAATCATGTGTCAAACGGAAGTGAATCGTCTGAAGATGAAACATGGGGACAGGAACAACAAGATTCTATGGCTATACAGAAAAATGAGGACATGAAAGTAAATGGTGAAGAGATGGAAGATATTAGTACAAGTTATTACAAATCAAACCAGCAAGGTGCGCGCGAATACAGACATTTGATTACAATCCATGGTGGAAAATCAGAAGGTACTATGAAGGATAGACTAAAAGTTGATGGCGGTAAAGTTAAAAGGCTAAGTTTGAGTGAGAAGAAACTCAAATCTGCTTCTGAGTCTCATGGAGCCGAGCTAATTAGGTTCACGCAAAAAAATATCCTTAGAATTTATCCTAAAGGAGAACGTGTTCAATCCACAAATTTTAGGCCACATTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATTCAATATGCAGGGGCATGGCAAATCACTCCGGTTGATGCAAGGGATGTTCAAAGCGAATGGAGGGTGTGGTTATGTGAAAAAACCTGAATTTCTAATTCAAGAAATTGTACATAATGAGGCTTTTGATCCTAAAAGAAGGTTGCCAGTGAAGCAGATATTAAAAGTCAAAGTATACAAAGGAGTTGGCTGGAGGTCAGATTTCAGTCCAACGCACTTCGATCGATTCTCTCCACCAGATTTTTACACAAAGGTTTGTATTGCTGGAGTGGGAGCTGATAGTGTGAAGATGAAAACAAGTGTAAAGATGGACAATTGGTATCCTGTTTGGGACGAAGAGTTCGAATTCCAATTGACTGTTCCAGAGCTTGCATTGCTCCGGATCGAAGTGAAAGATAAAGATAAGGGATCAGACGATTTTGCTGGACAAACTTGTTTGCCTGTATCAGAGCTAAGACATGGATTTCGGTCTGTTGCTTTGTGTGACAGAAAGGGAAAGAAATATAACTCTGTCAAGCTTTTACTTGGATTCCACCTTGAAACTTTAAATATATTGTAG 1782 0.3754 MKKKFIKLLSFLTNKGKVNKEEPPLDLKEAFSKFANGENHMSKEQLLRFMVEYQGEQNCTLLDLEPIIEKVLKMESSNTETSSIAGLNLDDFLDFLLLDDFNGPLKDEVHHDMKAPLSHYFMYTGHNSYLTGNQFTSESSDKPIIEALKQGVRVIELDLWPSSTKDGGIKVVHGKTLTTPVALTKCLEAIKEYAFVKSDFPVILTLEDHLTPKLQDNFAKMANQIFGEMLYCPTTDCITEFPSPASLKNMVLISTKPPKEFPQTDCANNHVSNGSESSEDETWGQEQQDSMAIQKNEDMKVNGEEMEDISTSYYKSNQQGAREYRHLITIHGGKSEGTMKDRLKVDGGKVKRLSLSEKKLKSASESHGAELIRFTQKNILRIYPKGERVQSTNFRPHLGWMYGAQMVAFNMQGHGKSLRLMQGMFKANGGCGYVKKPEFLIQEIVHNEAFDPKRRLPVKQILKVKVYKGVGWRSDFSPTHFDRFSPPDFYTKVCIAGVGADSVKMKTSVKMDNWYPVWDEEFEFQLTVPELALLRIEVKDKDKGSDDFAGQTCLPVSELRHGFRSVALCDRKGKKYNSVKLLLGFHLETLNIL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2158 593 CDD C2_PLC_like 459 582 - -
Mtr3g2158 593 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Mtr3g2158 593 Pfam Phosphatidylinositol-specific phospholipase C, X domain 113 256 IPR000909 -
Mtr3g2158 593 Gene3D Phosphatidylinositol (PI) phosphodiesterase 107 454 IPR017946 GO:0006629|GO:0008081
Mtr3g2158 593 Pfam C2 domain 461 561 IPR000008 -
Mtr3g2158 593 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 354 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Mtr3g2158 593 SMART plcx_3 111 256 IPR000909 -
Mtr3g2158 593 Gene3D - 23 103 - -
Mtr3g2158 593 ProSiteProfiles C2 domain profile. 440 570 IPR000008 -
Mtr3g2158 593 SUPERFAMILY PLC-like phosphodiesterases 111 442 IPR017946 GO:0006629|GO:0008081
Mtr3g2158 593 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 593 - -
Mtr3g2158 593 SUPERFAMILY EF-hand 5 113 IPR011992 -
Mtr3g2158 593 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 111 256 - -
Mtr3g2158 593 SMART plcy_3 324 441 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Mtr3g2158 593 PRINTS Phospholipase C signature 116 134 IPR001192 GO:0035556
Mtr3g2158 593 PRINTS Phospholipase C signature 142 162 IPR001192 GO:0035556
Mtr3g2158 593 PRINTS Phospholipase C signature 240 257 IPR001192 GO:0035556
Mtr3g2158 593 PRINTS Phospholipase C signature 379 400 IPR001192 GO:0035556
Mtr3g2158 593 PRINTS Phospholipase C signature 400 418 IPR001192 GO:0035556
Mtr3g2158 593 PRINTS Phospholipase C signature 554 564 IPR001192 GO:0035556
Mtr3g2158 593 Gene3D C2 domain 456 591 IPR035892 -
Mtr3g2158 593 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 461 585 IPR035892 -
Mtr3g2158 593 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 593 IPR001192 GO:0035556
Mtr3g2158 593 MobiDBLite consensus disorder prediction 261 288 - -
Mtr3g2158 593 SMART C2_3c 461 568 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2158 Mtr-Chr3 35141728 35148118 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2158 7 588 Acyl Lipid Metabolism Gene Families AT2G40116 52.815 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2158 K05857 - gmx:100803435 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2158 3 35141728 35148118 Mtr5g2819 5 36717715 36722190 ECH
Mtr3g2158 3 35141728 35148118 Mtr3g2158 3 35141728 35148118 ECH
Mtr3g2158 3 35141728 35148118 Mtr5g2818 5 36704957 36709284 PCT