Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3718 ATGGACTCTCACACTCCTCTTCTCAACACCACGGCGGCGACGTCATCTTCGTCTGAGTTATTGGAGTTAGACGGTGGCGACTACTTGGAAGTGAAAGGGTTCAAACAAGCAAGGAAAGTATTCGCCATTGAAACATTGAGAATATGGAAAATTGCATTGCCAATAGTTTTCAACATATTGTGTCAATATGGTGTTAACTCTATCACCAATATCTTCGTTGGTCATCTTGGCGACATTCAACTTTCTGCTATTTCTCTTATTAACTCTGTCATTGGCACTTTCGCTTTTGGCTTCATGTTAGGTATGGGGAGTGCGACCGAGACGCTCTGCGGTCAAGCTTTTGGAGCTGGACAGGTTCATATGCTTGGTGTTTACATGCAACGGTCGTGGATAATTTTATTTGTGACAAGTATTATCCTATTGCCAATATACATATTCGCTGCTCCAATTTTGAAACTTCTTGGCCAACAGGAAGATATGGCTGATCTTGCTGGAAGTTTTGCTCTTCTAGTAATTCCTCAATTTCTCTCACTTTCCTTTAACTTTCCGACCCAAAAGTTCCTTCAGTCTCAAAGTAAGGTCAATGTCATTGCTTGGATTGGGTTAGTGGCTCTAATTGTGCATATTGGGTTGCTCTGGCTCTTGATTTATGTATTAGATTTAGGCTTAACCGGTGCAGCGATTGCATTCGATGTCACAAGTTGGGGAATTACATTGGCTCAACTTGTTTATGTGGTGATTTGGTGTAAGGACTGCTGGAATGGATTGTCCTGGTTGGCTCTTAAGGATATATGGGCTTTTGTTAGGCTATCGGTTGCGTCAGCTGTTATGCTTTGCCTTGAAATTTGGTATATGATGAGCCTCATAGTTCTGGCTGGCCACCTTGATAATGCAGTGATTGCTGTTGATTCCATCTCTATATGTATGAATTTCAATGGATGGGAAGGCATGATCTTCATTGGAGTAAATGCAGCTATAAGTGTCAGAGTTTCCAACGAACTCGGACTTCGACATCCAAGAGCTGCCAAATACTCTGTCTATGTGACAGTCTTTCAATCTCTTTTCATGGGAATATTCTTCATGGGTGTAATTTTGGTAACTAAAGACTATTTTGCCATTGTTTTTACCAATAGTAAGACTTTGCAAGTGGCGGTTGCAGATCTGGGAAACCTCCTTGCCGTGACAATGGTTCTAAACAGCGTTCAACCAGTGATTTCGGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCTTGGTGGCTTACATCAATGTAGGTTGTTATTACTTGTTTGGGCTTCCACTAGGGTACATTCTTGGTAATGTTGCAGAATTGGGGGTTAAGGGACTTTGGGGAGGTATGATATGTGGAATTCTCCTCCAGACCTTGCTGCTCTCGGGGATACTTTACAAAACCAATTGGAACAAAGAGGTGGATAATACATCTGCACGGGTGCAGCAATGGGGTGGACAAACCGTAGAAGTTGACAGCAATGGGGTGGACAAGCCATAG 1506 0.4296 MDSHTPLLNTTAATSSSSELLELDGGDYLEVKGFKQARKVFAIETLRIWKIALPIVFNILCQYGVNSITNIFVGHLGDIQLSAISLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVHMLGVYMQRSWIILFVTSIILLPIYIFAAPILKLLGQQEDMADLAGSFALLVIPQFLSLSFNFPTQKFLQSQSKVNVIAWIGLVALIVHIGLLWLLIYVLDLGLTGAAIAFDVTSWGITLAQLVYVVIWCKDCWNGLSWLALKDIWAFVRLSVASAVMLCLEIWYMMSLIVLAGHLDNAVIAVDSISICMNFNGWEGMIFIGVNAAISVRVSNELGLRHPRAAKYSVYVTVFQSLFMGIFFMGVILVTKDYFAIVFTNSKTLQVAVADLGNLLAVTMVLNSVQPVISGVAVGGGWQALVAYINVGCYYLFGLPLGYILGNVAELGVKGLWGGMICGILLQTLLLSGILYKTNWNKEVDNTSARVQQWGGQTVEVDSNGVDKP* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3718 501 CDD MATE_eukaryotic 44 476 IPR045069 GO:0042910|GO:1990961
Mtr1g3718 501 TIGRFAM matE: MATE efflux family protein 54 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr1g3718 501 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 482 - -
Mtr1g3718 501 Pfam MatE 274 436 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr1g3718 501 Pfam MatE 54 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mtr1g3718 501 PANTHER PROTEIN DETOXIFICATION 18 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3718 Mtr-Chr1 48784429 48788248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3718 K03327 - gmx:100799559 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3718 1 48784429 48788248 Mtr1g3718 1 48784429 48788248 ECH
Mtr6g1236 6 17743470 17752217 Mtr1g3718 1 48784429 48788248 PCT