LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr1g3254	ATGACAGGGCTTGTGATGGTTACCAGAGGCGGTGGATGCGGTGGAGGAAGCAAAAGAACAAGACCAACACAAACAGAAGAAGATGAACAGCAGAACCAGCTTTCATTGGTGGCTTTGCTTTTGGCTGCTATAAGAAAATCAATGGTAGCATGCAGAGTAGATAGACCAGATCATGAAGTCATCTCAACCGTTCATCAAATGGAGATCGGATGGCCAACTGATGTTCAGCATATTACTCATGTTACCTTTGACCGTTTCAATGGCTTTCTTGGTCTTCCTGTTGAGTTTGAAGTTGAGATCCCTGGTCGTGTTCCTAGTGCTAGTGTAAGTGTGTTTGGAGTGTCAGCAGAATCCATGCAGTGTTCTTATGATTCAAAAGGAAACAGTGTCCCTACTATTCTCATGCTAATGCAGGACCGTTTATATTCACAGGGAGGATTAAAGGCTGAAGGTATATTCCGCATAAACCCGGAAAATAGTAAGGAGGAGCATGTGAGGAACCAGTTGAATAGTGGAATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTAATCAAAGCGTGGTTCCGAGAGCTTCCTTCGGGAGTACTAGATGGACTTTCCCCTGAGCAAGTTCTTGAGTGCAACACAGAAGAAGAATCTATTGAGCTTGTGAAGCAGCTAAAACCAACTGAGTCTGCCTTACTCAGTTGGGCTATTGATCTCATGGCTGATGTTGTCCAAGAGGAGGAGTTTAACAAAATGAATGCAAGAAACATTGCCATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACTGCTCTAATGCACGCTGTTCAAGTGATGAATTTGCTCAAGACATTGATAATGAAAACCCTTAGGGAACGTGAAGAAACAGCAACAGGTGGATATTCACCCATGTCCTTTCGCACATCATTTCGCCGTTCAGAGGATGAATATGACAGTCAACGAGAAACCGCAACAGGTGGATATTCACCCATGTCCTTTCGCTCTTCATATCGCCCGTCTGAGGATGAATATGACAGTCAACGAGAAATAGACGCTAGCAGTGAATTGAGAAGGACTAAGTCAGATTTTGATGATCATGCTCATTACAGAAATAGCAGTCAAGAGGAATTGGAGGCTGAATCTCTGAGCGAGATAGAAGATTGCTTCTTAAAAAAGTTGGATGAGCACACCAAAGAATTCTCAGAAGAACCTGAAAGTTATTTGCAAGAGTATGTGAGCTCTAAAAATTGCTGTGACTATAGTGTGGAACCTGCTGTACCAATTACTGATAGCGAAATTGTGAAGTCCTGCTTGAGTTTCGACAGAGAAAAGTTCAATGCTGACACAACGATTCCGTTACGTCTAGGATGGACAGACACCGAAGATGTGGAGATGATTGATAAATTTACGGATTCTGTTTCGCCTGTGCCGCGGCTCACATCTAGCTAA	1452	0.4346	MTGLVMVTRGGGCGGGSKRTRPTQTEEDEQQNQLSLVALLLAAIRKSMVACRVDRPDHEVISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEESIELVKQLKPTESALLSWAIDLMADVVQEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSFRTSFRRSEDEYDSQRETATGGYSPMSFRSSYRPSEDEYDSQREIDASSELRRTKSDFDDHAHYRNSSQEELEAESLSEIEDCFLKKLDEHTKEFSEEPESYLQEYVSSKNCCDYSVEPAVPITDSEIVKSCLSFDREKFNADTTIPLRLGWTDTEDVEMIDKFTDSVSPVPRLTSS*	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr1g3254	483	SMART	RhoGAP_3	128	291	IPR000198	GO:0007165
	Mtr1g3254	483	SUPERFAMILY	GTPase activation domain, GAP	110	288	IPR008936	GO:0007165
	Mtr1g3254	483	SMART	PBD_5	69	103	IPR000095	-
	Mtr1g3254	483	CDD	CRIB	67	107	-	-
	Mtr1g3254	483	MobiDBLite	consensus disorder prediction	323	337	-	-
	Mtr1g3254	483	PANTHER	RHO GTPASE ACTIVATION PROTEIN-RELATED	325	459	-	-
	Mtr1g3254	483	PANTHER	RHO GTPASE ACTIVATION PROTEIN-RELATED	1	328	-	-
	Mtr1g3254	483	MobiDBLite	consensus disorder prediction	339	378	-	-
	Mtr1g3254	483	PANTHER	MKIAA1688 PROTEIN	325	459	IPR044785	GO:0005096
	Mtr1g3254	483	PANTHER	MKIAA1688 PROTEIN	1	328	IPR044785	GO:0005096
	Mtr1g3254	483	Gene3D	CRIB domain	64	100	IPR036936	-
	Mtr1g3254	483	MobiDBLite	consensus disorder prediction	297	378	-	-
	Mtr1g3254	483	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	114	295	IPR000198	GO:0007165
	Mtr1g3254	483	CDD	RhoGAP	131	287	-	-
	Mtr1g3254	483	Gene3D	Rho GTPase activation protein	101	295	IPR008936	GO:0007165
	Mtr1g3254	483	Pfam	P21-Rho-binding domain	68	97	IPR000095	-
	Mtr1g3254	483	Pfam	RhoGAP domain	131	265	IPR000198	GO:0007165
	Mtr1g3254	483	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr1g3254	Mtr-Chr1	43825600	43828790	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr1g3254	-		-	mtr:MTR_1g089500	949.888

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g3254	1	43825600	43828790	Mtr1g3254	1	43825600	43828790	ECH
	Mtr7g3375	7	50891713	50894900	Mtr1g3254	1	43825600	43828790	PCT